Only show stexaminer button for directed graphs
[scpubgit/stemmaweb.git] / lib / stemmaweb / Controller / Root.pm
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b8a92065 1package stemmaweb::Controller::Root;
2use Moose;
3use namespace::autoclean;
4use Text::Tradition::Analysis qw/ run_analysis /;
41279a86 5use TryCatch;
16143416 6use XML::LibXML;
7use XML::LibXML::XPathContext;
b8a92065 8
9
10BEGIN { extends 'Catalyst::Controller' }
11
12#
13# Sets the actions in this controller to be registered with no prefix
14# so they function identically to actions created in MyApp.pm
15#
16__PACKAGE__->config(namespace => '');
17
18=head1 NAME
19
20stemmaweb::Controller::Root - Root Controller for stemmaweb
21
22=head1 DESCRIPTION
23
24Serves up the main container pages.
25
26=head1 URLs
27
28=head2 index
29
30The root page (/). Serves the main container page, from which the various
31components will be loaded.
32
33=cut
34
35sub index :Path :Args(0) {
36 my ( $self, $c ) = @_;
37
c655153c 38 # Are we being asked to load a text immediately? If so
39 if( $c->req->param('withtradition') ) {
40 $c->stash->{'withtradition'} = $c->req->param('withtradition');
41 }
b8a92065 42 $c->stash->{template} = 'index.tt';
43}
44
3f9d7ae5 45=head2 about
46
47A general overview/documentation page for the site.
48
49=cut
50
51sub about :Local :Args(0) {
52 my( $self, $c ) = @_;
53 $c->stash->{template} = 'about.tt';
54}
55
4a6b658f 56=head2 help/*
57
58A dispatcher for documentation of various aspects of the application.
59
60=cut
61
62sub help :Local :Args(1) {
63 my( $self, $c, $topic ) = @_;
64 $c->stash->{template} = "$topic.tt";
65}
66
b8a92065 67=head1 Elements of index page
68
69=head2 directory
70
71 GET /directory
72
70ccaf75 73Serves a snippet of HTML that lists the available texts. This returns texts belonging to the logged-in user if any, otherwise it returns all public texts.
b8a92065 74
75=cut
70ccaf75 76
b8a92065 77sub directory :Local :Args(0) {
78 my( $self, $c ) = @_;
79 my $m = $c->model('Directory');
69799996 80 # Is someone logged in?
98a45925 81 my %usertexts;
69799996 82 if( $c->user_exists ) {
83 my $user = $c->user->get_object;
98a45925 84 my @list = $m->traditionlist( $user );
85 map { $usertexts{$_->{id}} = 1 } @list;
86 $c->stash->{usertexts} = \@list;
69799996 87 $c->stash->{is_admin} = 1 if $user->is_admin;
88 }
98a45925 89 # List public (i.e. readonly) texts separately from any user (i.e.
90 # full access) texts that exist. Admin users therefore have nothing
91 # in this list.
92 my @plist = grep { !$usertexts{$_->{id}} } $m->traditionlist('public');
93 $c->stash->{publictexts} = \@plist;
b8a92065 94 $c->stash->{template} = 'directory.tt';
95}
96
75354c3a 97=head1 AJAX methods for traditions and their properties
fb6e49b3 98
75354c3a 99=head2 newtradition
100
101 POST /newtradition,
102 { name: <name>,
103 language: <language>,
104 public: <is_public>,
2ece58b3 105 file: <fileupload> }
fb6e49b3 106
75354c3a 107Creates a new tradition belonging to the logged-in user, with the given name
108and the collation given in the uploaded file. The file type is indicated via
109the filename extension (.csv, .txt, .xls, .xlsx, .xml). Returns the ID and
110name of the new tradition.
111
112=cut
113
114sub newtradition :Local :Args(0) {
115 my( $self, $c ) = @_;
116 return _json_error( $c, 403, 'Cannot save a tradition without being logged in' )
117 unless $c->user_exists;
118
119 my $user = $c->user->get_object;
120 # Grab the file upload, check its name/extension, and call the
121 # appropriate parser(s).
2ece58b3 122 my $upload = $c->request->upload('file');
75354c3a 123 my $name = $c->request->param('name') || 'Uploaded tradition';
124 my $lang = $c->request->param( 'language' ) || 'Default';
125 my $public = $c->request->param( 'public' ) ? 1 : undef;
2ece58b3 126 my( $ext ) = $upload->filename =~ /\.(\w+)$/;
75354c3a 127 my %newopts = (
128 'name' => $name,
129 'language' => $lang,
130 'public' => $public,
2ece58b3 131 'file' => $upload->tempname
75354c3a 132 );
133
134 my $tradition;
135 my $errmsg;
136 if( $ext eq 'xml' ) {
16143416 137 my $type;
138 # Parse the XML to see which flavor it is.
139 my $parser = XML::LibXML->new();
140 my $doc;
141 try {
142 $doc = $parser->parse_file( $newopts{'file'} );
143 } catch( $err ) {
144 $errmsg = "XML file parsing error: $err";
145 }
146 if( $doc ) {
147 if( $doc->documentElement->nodeName eq 'GraphML' ) {
148 $type = 'CollateX';
149 } elsif( $doc->documentElement->nodeName ne 'TEI' ) {
150 $errmsg = 'Unrecognized XML type ' . $doc->documentElement->nodeName;
151 } else {
152 my $xpc = XML::LibXML::XPathContext->new( $doc->documentElement );
153 my $venc = $xpc->findvalue( '/TEI/teiHeader/encodingDesc/variantEncoding/attribute::method' );
154 if( $venc && $venc eq 'double-end-point' ) {
155 $type = 'CTE';
156 } else {
157 $type = 'TEI';
158 }
159 }
160 }
161 # Try the relevant XML parsing option.
162 if( $type ) {
163 delete $newopts{'file'};
164 $newopts{'xmlobj'} = $doc;
75354c3a 165 try {
166 $tradition = Text::Tradition->new( %newopts, 'input' => $type );
167 } catch ( Text::Tradition::Error $e ) {
168 $errmsg = $e->message;
16143416 169 } catch ( $e ) {
170 $errmsg = "Unexpected parsing error: $e";
699ab7ea 171 }
75354c3a 172 }
173 } elsif( $ext =~ /^(txt|csv|xls(x)?)$/ ) {
174 # If it's Excel we need to pass excel => $ext;
175 # otherwise we need to pass sep_char => [record separator].
176 if( $ext =~ /xls/ ) {
177 $newopts{'excel'} = $ext;
178 } else {
179 $newopts{'sep_char'} = $ext eq 'txt' ? "\t" : ',';
180 }
181 try {
182 $tradition = Text::Tradition->new(
183 %newopts,
184 'input' => 'Tabular',
185 );
186 } catch ( Text::Tradition::Error $e ) {
187 $errmsg = $e->message;
16143416 188 } catch ( $e ) {
189 $errmsg = "Unexpected parsing error: $e";
75354c3a 190 }
191 } else {
192 # Error unless we have a recognized filename extension
2bfac197 193 return _json_error( $c, 403, "Unrecognized file type extension $ext" );
75354c3a 194 }
195
196 # Save the tradition if we have it, and return its data or else the
197 # error that occurred trying to make it.
198 if( $errmsg ) {
199 return _json_error( $c, 500, "Error parsing tradition .$ext file: $errmsg" );
200 } elsif( !$tradition ) {
201 return _json_error( $c, 500, "No error caught but tradition not created" );
202 }
203
204 my $m = $c->model('Directory');
205 $user->add_tradition( $tradition );
206 my $id = $c->model('Directory')->store( $tradition );
207 $c->model('Directory')->store( $user );
208 $c->stash->{'result'} = { 'id' => $id, 'name' => $tradition->name };
209 $c->forward('View::JSON');
210}
211
212=head2 textinfo
213
214 GET /textinfo/$textid
215 POST /textinfo/$textid,
216 { name: $new_name,
217 language: $new_language,
218 public: $is_public,
219 owner: $new_userid } # only admin users can update the owner
220
221Returns information about a particular text.
fb6e49b3 222
223=cut
224
75354c3a 225sub textinfo :Local :Args(1) {
fb6e49b3 226 my( $self, $c, $textid ) = @_;
98a45925 227 my $tradition = $c->model('Directory')->tradition( $textid );
6978962f 228 ## Have to keep users in the same scope as tradition
229 my $newuser;
230 my $olduser;
75354c3a 231 unless( $tradition ) {
2bfac197 232 return _json_error( $c, 404, "No tradition with ID $textid" );
75354c3a 233 }
41279a86 234 my $ok = _check_permission( $c, $tradition );
235 return unless $ok;
75354c3a 236 if( $c->req->method eq 'POST' ) {
237 return _json_error( $c, 403,
238 'You do not have permission to update this tradition' )
239 unless $ok eq 'full';
240 my $params = $c->request->parameters;
241 # Handle changes to owner-accessible parameters
242 my $m = $c->model('Directory');
243 my $changed;
ce1c5863 244 # Handle name param - easy
245 if( exists $params->{name} ) {
246 my $newname = delete $params->{name};
247 unless( $tradition->name eq $newname ) {
248 try {
249 $tradition->name( $newname );
75354c3a 250 $changed = 1;
ce1c5863 251 } catch {
252 return _json_error( $c, 500, "Error setting name to $newname" );
75354c3a 253 }
254 }
255 }
ce1c5863 256 # Handle language param, making Default => null
257 my $langval = delete $params->{language} || 'Default';
ed2aaedb 258
259 unless( $tradition->language eq $langval || !$tradition->can('language') ) {
ce1c5863 260 try {
261 $tradition->language( $langval );
262 $changed = 1;
263 } catch {
264 return _json_error( $c, 500, "Error setting language to $langval" );
265 }
266 }
267
75354c3a 268 # Handle our boolean
ce1c5863 269 my $ispublic = $tradition->public;
75354c3a 270 if( delete $params->{'public'} ) { # if it's any true value...
271 $tradition->public( 1 );
ce1c5863 272 $changed = 1 unless $ispublic;
273 } else { # the checkbox was unchecked, ergo it should not be public
274 $tradition->public( 0 );
275 $changed = 1 if $ispublic;
75354c3a 276 }
ce1c5863 277
278 # Handle ownership change
75354c3a 279 if( exists $params->{'owner'} ) {
280 # Only admins can update user / owner
281 my $newownerid = delete $params->{'owner'};
16a7dd1f 282 if( $tradition->has_user && !$tradition->user ) {
283 $tradition->clear_user;
284 }
4f849eea 285 unless( !$newownerid ||
6978962f 286 ( $tradition->has_user && $tradition->user->email eq $newownerid ) ) {
75354c3a 287 unless( $c->user->get_object->is_admin ) {
288 return _json_error( $c, 403,
289 "Only admin users can change tradition ownership" );
290 }
6978962f 291 $newuser = $m->find_user({ email => $newownerid });
75354c3a 292 unless( $newuser ) {
ce1c5863 293 return _json_error( $c, 500, "No such user " . $newownerid );
75354c3a 294 }
6978962f 295 if( $tradition->has_user ) {
296 $olduser = $tradition->user;
297 $olduser->remove_tradition( $tradition );
298 }
75354c3a 299 $newuser->add_tradition( $tradition );
300 $changed = 1;
301 }
302 }
303 # TODO check for rogue parameters
304 if( scalar keys %$params ) {
305 my $rogueparams = join( ', ', keys %$params );
306 return _json_error( $c, 403, "Request parameters $rogueparams not recognized" );
307 }
308 # If we safely got to the end, then write to the database.
309 $m->save( $tradition ) if $changed;
310 $m->save( $newuser ) if $newuser;
311 }
41279a86 312
75354c3a 313 # Now return the current textinfo, whether GET or successful POST.
314 my $textinfo = {
315 textid => $textid,
316 name => $tradition->name,
ed2aaedb 317 #language => $tradition->language,
e0b90236 318 public => $tradition->public || 0,
2ece58b3 319 owner => $tradition->user ? $tradition->user->email : undef,
75354c3a 320 witnesses => [ map { $_->sigil } $tradition->witnesses ],
321 };
ed2aaedb 322 if( $tradition->can('language') ) {
323 $textinfo->{'language'} = $tradition->language;
324 }
63378fe0 325 my @stemmasvg = map { {
326 name => $_->identifier,
327 directed => _json_bool( !$_->is_undirected ),
328 svg => $_->as_svg() } }
ec2f89ff 329 $tradition->stemmata;
75354c3a 330 map { $_ =~ s/\n/ /mg } @stemmasvg;
331 $textinfo->{stemmata} = \@stemmasvg;
332 $c->stash->{'result'} = $textinfo;
333 $c->forward('View::JSON');
fb6e49b3 334}
b8a92065 335
75354c3a 336=head2 variantgraph
b8a92065 337
75354c3a 338 GET /variantgraph/$textid
339
340Returns the variant graph for the text specified at $textid, in SVG form.
b8a92065 341
342=cut
343
75354c3a 344sub variantgraph :Local :Args(1) {
b8a92065 345 my( $self, $c, $textid ) = @_;
98a45925 346 my $tradition = $c->model('Directory')->tradition( $textid );
75354c3a 347 unless( $tradition ) {
2bfac197 348 return _json_error( $c, 404, "No tradition with ID $textid" );
75354c3a 349 }
41279a86 350 my $ok = _check_permission( $c, $tradition );
351 return unless $ok;
352
98a45925 353 my $collation = $tradition->collation;
75354c3a 354 $c->stash->{'result'} = $collation->as_svg;
355 $c->forward('View::SVG');
b8a92065 356}
75354c3a 357
b8a92065 358=head2 stemma
359
75354c3a 360 GET /stemma/$textid/$stemmaseq
361 POST /stemma/$textid/$stemmaseq, { 'dot' => $dot_string }
b8a92065 362
75354c3a 363Returns an SVG representation of the given stemma hypothesis for the text.
364If the URL is called with POST, the stemma at $stemmaseq will be altered
365to reflect the definition in $dot_string. If $stemmaseq is 'n', a new
366stemma will be added.
b8a92065 367
368=cut
369
75354c3a 370sub stemma :Local :Args(2) {
41279a86 371 my( $self, $c, $textid, $stemmaid ) = @_;
b8a92065 372 my $m = $c->model('Directory');
373 my $tradition = $m->tradition( $textid );
75354c3a 374 unless( $tradition ) {
2bfac197 375 return _json_error( $c, 404, "No tradition with ID $textid" );
75354c3a 376 }
41279a86 377 my $ok = _check_permission( $c, $tradition );
378 return unless $ok;
379
41279a86 380 $c->stash->{'result'} = '';
75354c3a 381 my $stemma;
382 if( $c->req->method eq 'POST' ) {
383 if( $ok eq 'full' ) {
41279a86 384 my $dot = $c->request->body_params->{'dot'};
174e78df 385 # Graph::Reader::Dot does not handle bare unicode. We get around this
4770d077 386 # by wrapping all words in double quotes, as long as they aren't already
be536c89 387 # wrapped, and as long as they aren't the initial '(di)?graph .*'.
4770d077 388 # Horrible HACK.
be536c89 389 my @dlines = split( "\n", $dot );
390 my $wdot = '';
391 foreach( @dlines ) {
392 unless( /^(di)?graph/ ) { # Skip the first line
393 s/(?<!")\b(\w+)\b(?!")/"$1"/g;
394 }
395 $wdot .= "$_\n";
396 }
397 # $dot =~ s/(?<!")\b(?!(?:digraph|stemma)\b)(\w+)\b(?!")/"$1"/g;
398 $dot = $wdot;
399 print STDERR "$dot\n";
75354c3a 400 try {
401 if( $stemmaid eq 'n' ) {
402 # We are adding a new stemma.
3f7346b1 403 $stemmaid = $tradition->stemma_count;
75354c3a 404 $stemma = $tradition->add_stemma( 'dot' => $dot );
2bfac197 405 } elsif( $stemmaid !~ /^\d+$/ ) {
406 return _json_error( $c, 403, "Invalid stemma ID specification $stemmaid" );
75354c3a 407 } elsif( $stemmaid < $tradition->stemma_count ) {
408 # We are updating an existing stemma.
409 $stemma = $tradition->stemma( $stemmaid );
410 $stemma->alter_graph( $dot );
411 } else {
412 # Unrecognized stemma ID
2bfac197 413 return _json_error( $c, 404, "No stemma at index $stemmaid, cannot update" );
75354c3a 414 }
415 } catch ( Text::Tradition::Error $e ) {
416 return _json_error( $c, 500, $e->message );
417 }
41279a86 418 $m->store( $tradition );
75354c3a 419 } else {
420 # No permissions to update the stemma
421 return _json_error( $c, 403,
422 'You do not have permission to update stemmata for this tradition' );
41279a86 423 }
b8a92065 424 }
75354c3a 425
426 # For a GET or a successful POST request, return the SVG representation
427 # of the stemma in question, if any.
75354c3a 428 if( !$stemma && $tradition->stemma_count > $stemmaid ) {
429 $stemma = $tradition->stemma( $stemmaid );
430 }
2923ebb1 431 my $stemma_xml = $stemma ? $stemma->as_svg() : '';
ce1c5863 432 # What was requested, XML or JSON?
433 my $return_view = 'SVG';
434 if( my $accept_header = $c->req->header('Accept') ) {
435 $c->log->debug( "Received Accept header: $accept_header" );
436 foreach my $type ( split( /,\s*/, $accept_header ) ) {
437 # If we were first asked for XML, return SVG
438 last if $type =~ /^(application|text)\/xml$/;
439 # If we were first asked for JSON, return JSON
440 if( $type eq 'application/json' ) {
441 $return_view = 'JSON';
442 last;
443 }
444 }
445 }
446 if( $return_view eq 'SVG' ) {
447 $c->stash->{'result'} = $stemma_xml;
448 $c->forward('View::SVG');
449 } else { # JSON
450 $stemma_xml =~ s/\n/ /mg;
be536c89 451 $c->stash->{'result'} = {
452 'stemmaid' => $stemmaid,
453 'name' => $stemma->identifier,
63378fe0 454 'directed' => _json_bool( !$stemma->is_undirected ),
be536c89 455 'svg' => $stemma_xml };
ce1c5863 456 $c->forward('View::JSON');
457 }
b8a92065 458}
459
460=head2 stemmadot
461
75354c3a 462 GET /stemmadot/$textid/$stemmaseq
b8a92065 463
464Returns the 'dot' format representation of the current stemma hypothesis.
465
466=cut
467
75354c3a 468sub stemmadot :Local :Args(2) {
469 my( $self, $c, $textid, $stemmaid ) = @_;
b8a92065 470 my $m = $c->model('Directory');
471 my $tradition = $m->tradition( $textid );
75354c3a 472 unless( $tradition ) {
2bfac197 473 return _json_error( $c, 404, "No tradition with ID $textid" );
75354c3a 474 }
41279a86 475 my $ok = _check_permission( $c, $tradition );
476 return unless $ok;
75354c3a 477 my $stemma = $tradition->stemma( $stemmaid );
478 unless( $stemma ) {
2bfac197 479 return _json_error( $c, 404, "Tradition $textid has no stemma ID $stemmaid" );
75354c3a 480 }
481 # Get the dot and transmute its line breaks to literal '|n'
482 $c->stash->{'result'} = { 'dot' => $stemma->editable( { linesep => '|n' } ) };
41279a86 483 $c->forward('View::JSON');
484}
485
38627d20 486=head2 download
487
488 GET /download/$textid
489
490Returns the full XML definition of the tradition and its stemmata, if any.
491
492=cut
493
494sub download :Local :Args(1) {
495 my( $self, $c, $textid ) = @_;
496 my $tradition = $c->model('Directory')->tradition( $textid );
497 unless( $tradition ) {
498 return _json_error( $c, 404, "No tradition with ID $textid" );
499 }
500 my $ok = _check_permission( $c, $tradition );
501 return unless $ok;
502 try {
503 $c->stash->{'result'} = $tradition->collation->as_graphml();
504 } catch( Text::Tradition::Error $e ) {
505 return _json_error( $c, 500, $e->message );
506 }
507 $c->forward('View::GraphML');
508}
509
75354c3a 510####################
511### Helper functions
512####################
41279a86 513
75354c3a 514# Helper to check what permission, if any, the active user has for
515# the given tradition
41279a86 516sub _check_permission {
517 my( $c, $tradition ) = @_;
518 my $user = $c->user_exists ? $c->user->get_object : undef;
519 if( $user ) {
929ba7c8 520 return 'full' if ( $user->is_admin ||
521 ( $tradition->has_user && $tradition->user->id eq $user->id ) );
080f8a02 522 }
523 # Text doesn't belong to us, so maybe it's public?
524 return 'readonly' if $tradition->public;
525
526 # ...nope. Forbidden!
75354c3a 527 return _json_error( $c, 403, 'You do not have permission to view this tradition.' );
528}
529
530# Helper to throw a JSON exception
531sub _json_error {
532 my( $c, $code, $errmsg ) = @_;
533 $c->response->status( $code );
534 $c->stash->{'result'} = { 'error' => $errmsg };
535 $c->forward('View::JSON');
929ba7c8 536 return 0;
41279a86 537}
538
63378fe0 539sub _json_bool {
540 return $_[0] ? JSON::true : JSON::false;
541}
542
b8a92065 543=head2 default
544
545Standard 404 error page
546
547=cut
548
549sub default :Path {
550 my ( $self, $c ) = @_;
551 $c->response->body( 'Page not found' );
552 $c->response->status(404);
553}
554
555=head2 end
556
557Attempt to render a view, if needed.
558
559=cut
560
561sub end : ActionClass('RenderView') {}
562
563=head1 AUTHOR
564
565Tara L Andrews
566
567=head1 LICENSE
568
569This library is free software. You can redistribute it and/or modify
570it under the same terms as Perl itself.
571
572=cut
573
574__PACKAGE__->meta->make_immutable;
575
5761;