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use Text::Tradition::Collation::Path;
use Text::Tradition::Collation::Reading;
use Text::Tradition::Collation::Relationship;
-use Text::Tradition::Collation::Segment;
use XML::LibXML;
use Moose;
add_reading => 'add_node',
add_lacuna => 'add_node',
del_reading => 'del_node',
- del_segment => 'del_node',
add_path => 'add_edge',
del_path => 'del_edge',
reading => 'node',
path => 'edge',
readings => 'nodes',
- segments => 'nodes',
paths => 'edges',
relationships => 'edges',
},
# Pass through any graph-specific options.
my $shape = exists( $args->{'shape'} ) ? $args->{'shape'} : 'ellipse';
$self->graph->set_attribute( 'node', 'shape', $shape );
+
+ # Start and end points for all texts
+ $self->start( 'INIT' );
+ $self->end( 'INIT' );
}
around add_lacuna => sub {
return @result;
};
-around readings => sub {
- my $orig = shift;
- my $self = shift;
- my @result = grep { $_->sub_class ne 'segment' } $self->$orig( @_ );
- return @result;
-};
-
-around segments => sub {
- my $orig = shift;
- my $self = shift;
- my @result = grep { $_->sub_class eq 'segment' } $self->$orig( @_ );
- return @result;
-};
-
# Wrapper around merge_nodes
-
sub merge_readings {
my $self = shift;
my $first_node = shift;
return scalar @relevant;
}
-## Dealing with groups of readings, i.e. segments.
-
-sub add_segment {
- my( $self, @items ) = @_;
- my $segment = Text::Tradition::Collation::Segment->new( 'members' => \@items );
- return $segment;
-}
-
## Dealing with relationships between readings. This is a different
## sort of graph edge. Return a success/failure value and a list of
## node pairs that have been linked.
my( $self, $source, $target, $options ) = @_;
# Make sure there is not another relationship between these two
- # readings or segments already
+ # readings already
$source = $self->reading( $source )
unless ref( $source ) && $source->isa( 'Graph::Easy::Node' );
$target = $self->reading( $target )
foreach my $reading ( $self->readings ) {
# Need not output nodes without separate labels
next if $reading->name eq $reading->label;
- # TODO output readings or segments, but not both
- next if $reading->class eq 'node.segment';
$dot .= sprintf( "\t\"%s\" [ label=\"%s\" ];\n", $reading->name, $reading->label );
}
# Add the data keys for edges, i.e. witnesses
my $edi = 0;
my %edge_data_keys;
- foreach my $edge_key( qw/ witness_main witness_ante_corr relationship class / ) {
+ foreach my $edge_key( qw/ witness extra relationship class / ) {
$edge_data_keys{$edge_key} = 'de'.$edi++;
my $key = $root->addNewChild( $graphml_ns, 'key' );
$key->setAttribute( 'attr.name', $edge_key );
- $key->setAttribute( 'attr.type', 'string' );
+ $key->setAttribute( 'attr.type', $edge_key eq 'extra' ? 'boolean' : 'string' );
$key->setAttribute( 'for', 'edge' );
$key->setAttribute( 'id', $edge_data_keys{$edge_key} );
}
# Add the graph, its nodes, and its edges
my $graph = $root->addNewChild( $graphml_ns, 'graph' );
$graph->setAttribute( 'edgedefault', 'directed' );
- $graph->setAttribute( 'id', 'g0' ); # TODO make this meaningful
+ $graph->setAttribute( 'id', $self->tradition->name );
$graph->setAttribute( 'parse.edgeids', 'canonical' );
$graph->setAttribute( 'parse.edges', scalar($self->paths) );
$graph->setAttribute( 'parse.nodeids', 'canonical' );
if $n->has_rank;
_add_graphml_data( $node_el, $node_data_keys{'class'}, $n->sub_class );
_add_graphml_data( $node_el, $node_data_keys{'identical'}, $n->primary->name )
- if $n->has_primary;
+ if $n->has_primary && $n->primary ne $n;
}
- # Add any segments we have
- foreach my $n ( sort { $a->name cmp $b->name } $self->segments ) {
- my $node_el = $graph->addNewChild( $graphml_ns, 'node' );
- my $node_xmlid = 'n' . $node_ctr++;
- $node_hash{ $n->name } = $node_xmlid;
- $node_el->setAttribute( 'id', $node_xmlid );
- _add_graphml_data( $node_el, $node_data_keys{'class'}, $n->sub_class );
- _add_graphml_data( $node_el, $node_data_keys{'name'}, $n->name );
- }
-
- # Add the path, relationship, and segment edges
+ # Add the path and relationship edges
my $edge_ctr = 0;
foreach my $e ( sort { $a->from->name cmp $b->from->name } $self->graph->edges() ) {
my( $name, $from, $to ) = ( 'e'.$edge_ctr++,
$edge_el->setAttribute( 'id', $name );
# Add the edge class
_add_graphml_data( $edge_el, $edge_data_keys{'class'}, $e->sub_class );
+
+ # For some classes we have extra information to save.
if( $e->sub_class eq 'path' ) {
# It's a witness path, so add the witness
my $base = $e->label;
my $key = $edge_data_keys{'witness_main'};
- # TODO kind of hacky
- if( $e->label =~ /^(.*?)\s+(\(a\.c\.\))$/ ) {
+ # Is this an ante-corr witness?
+ my $aclabel = $self->ac_label;
+ if( $e->label =~ /^(.*)\Q$aclabel\E$/ ) {
+ # Keep the base witness
$base = $1;
- $key = $edge_data_keys{'witness_ante_corr'};
+ # ...and record that this is an 'extra' reading path
+ _add_graphml_data( $edge_el, $edge_data_keys{'extra'}, 'true' );
}
- _add_graphml_data( $edge_el, $key, $base );
+ _add_graphml_data( $edge_el, $edge_data_keys{'witness'}, $base );
} elsif( $e->sub_class eq 'relationship' ) {
- # It's a relationship
+ # It's a relationship, so save the relationship type
_add_graphml_data( $edge_el, $edge_data_keys{'relationship'}, $e->label );
- } # else a segment, nothing to record but source, target, class
+ }
}
- # Return the thing
- $self->_save_graphml( $graphml->toString(1) );
- return $graphml->toString(1);
+ # Save and return the thing
+ my $result = decode_utf8( $graphml->toString(1) );
+ $self->_save_graphml( $result );
+ return $result;
}
sub _add_graphml_data {
sub start {
# Return the beginning reading of the graph.
- my $self = shift;
- my( $new_start ) = @_;
- if( $new_start ) {
+ my( $self, $new_start ) = @_;
+ my $start = $self->reading( '#START#' );
+ if( ref( $new_start ) eq 'Text::Tradition::Collation::Reading' ) {
+ # Replace the existing start node.
$self->del_reading( '#START#' );
$self->graph->rename_node( $new_start, '#START#' );
+ $start = $new_start;
+ } elsif ( $new_start && $new_start eq 'INIT' ) {
+ # Make a new start node.
+ $start = $self->add_reading( '#START#' );
}
+ # Make sure the start node is a meta node
+ $start->is_meta( 1 );
# Make sure the start node has a start position.
- unless( $self->reading( '#START#' )->has_rank ) {
- $self->reading( '#START#' )->rank( '0' );
+ unless( $start->has_rank ) {
+ $start->rank( '0' );
}
- return $self->reading('#START#');
+ return $start;
}
=item B<end>
sub end {
my $self = shift;
my( $new_end ) = @_;
- if( $new_end ) {
+ my $end = $self->reading( '#END#' );
+ if( ref( $new_end ) eq 'Text::Tradition::Collation::Reading' ) {
$self->del_reading( '#END#' );
$self->graph->rename_node( $new_end, '#END#' );
+ $end = $new_end
+ } elsif ( $new_end && $new_end eq 'INIT' ) {
+ # Make a new start node.
+ $end = $self->add_reading( '#END#' );
}
- return $self->reading('#END#');
+ # Make sure the start node is a meta node
+ $end->is_meta( 1 );
+ return $end;
}
=item B<reading_sequence>
=cut
-my( $IDKEY, $TOKENKEY, $TRANSPOS_KEY, $RANK_KEY, $CLASS_KEY )
- = qw/ name reading identical rank class /;
+# TODO share these with Collation.pm somehow
+my( $IDKEY, $TOKENKEY, $TRANSPOS_KEY, $RANK_KEY, $CLASS_KEY,
+ $SOURCE_KEY, $TARGET_KEY, $WITNESS_KEY, $EXTRA_KEY, $RELATIONSHIP_KEY )
+ = qw/ name reading identical rank class
+ source target witness extra relationship/;
sub parse {
my( $tradition, $graphml_str ) = @_;
+
+ # TODO this is begging for stream parsing instead of multiple loops.
my $graph_data = Text::Tradition::Parser::GraphML::parse( $graphml_str );
my $collation = $tradition->collation;
# after the nodes & edges are created.
print STDERR "Adding graph nodes\n";
foreach my $n ( @{$graph_data->{'nodes'}} ) {
- # Each node is either a segment or a reading, depending on
- # its class. Readings have text, segments don't.
- my %node_data = %$n;
+ # First extract the data that we can use without reference to
+ # anything else.
+ my %node_data = %$n; # Need $n itself untouched for edge processing
my $nodeid = delete $node_data{$IDKEY};
my $reading = delete $node_data{$TOKENKEY};
- my $class = $node_data{$CLASS_KEY} || '';
- # TODO this is a hack, fix it?
- $class = 'reading' unless $class eq 'segment';
- my $method = $class eq 'segment' ? "add_$class" : "add_reading";
- my $gnode = $collation->$method( $nodeid );
- $gnode->label( $reading );
- $gnode->set_common if $class eq 'common';
-
- # Now save the rest of the data, i.e. not the ID or label,
+ my $class = delete $node_data{$CLASS_KEY} || '';
+ my $rank = delete $node_data{$RANK_KEY};
+
+ # Create the node. Current valid classes are common and meta.
+ # Everything else is a normal reading.
+ my $gnode = $collation->add_reading( $nodeid );
+ $gnode->text( $reading );
+ $gnode->make_common if $class eq 'common';
+ $gnode->is_meta( 1 ) if $class eq 'meta';
+ $gnode->rank( $rank ) if defined $rank;
+
+ # Now save the data that we need for post-processing,
# if it exists.
if ( keys %node_data ) {
- $extra_data->{$nodeid} = \%node_data;
+ $extra_data->{$nodeid} = \%node_data
}
}
# Now add the edges.
print STDERR "Adding graph edges\n";
+ $DB::single = 1;
foreach my $e ( @{$graph_data->{'edges'}} ) {
- my %edge_data = %$e;
- my $from = delete $edge_data{'source'};
- my $to = delete $edge_data{'target'};
- my $class = delete $edge_data{'class'};
-
- # Whatever is left tells us what kind of edge it is.
- foreach my $wkey ( keys %edge_data ) {
- if( $wkey =~ /^witness/ ) {
- unless( $class eq 'path' ) {
- warn "Cannot add witness label to a $class edge";
- next;
- }
- my $wit = $edge_data{$wkey};
- unless( $witnesses{$wit} ) {
- $tradition->add_witness( sigil => $wit );
- $witnesses{$wit} = 1;
- }
- my $label = $wkey eq 'witness_ante_corr'
- ? $wit . $collation->ac_label : $wit;
- $collation->add_path( $from->{$IDKEY}, $to->{$IDKEY}, $label );
- } elsif( $wkey eq 'relationship' ) {
- unless( $class eq 'relationship' ) {
- warn "Cannot add relationship label to a $class edge";
- next;
- }
- my $rel = $edge_data{$wkey};
- # TODO handle global relationships
- $collation->add_relationship( $rel, $from->{$IDKEY}, $to->{$IDKEY} );
- } else {
- my $seg_edge = $collation->graph->add_edge( $from->{$IDKEY}, $to->{$IDKEY} );
- $seg_edge->set_attribute( 'class', 'segment' );
- }
- }
+ my $from = $e->{$SOURCE_KEY};
+ my $to = $e->{$TARGET_KEY};
+ my $class = $e->{$CLASS_KEY};
+
+ # We may have more information depending on the class.
+ if( $class eq 'path' ) {
+ # We need the witness, and whether it is an 'extra' reading path.
+ my $wit = $e->{$WITNESS_KEY};
+ warn "No witness label on path edge!" unless $wit;
+ my $extra = $e->{$EXTRA_KEY};
+ my $label = $wit . ( $extra ? $collation->ac_label : '' );
+ $collation->add_path( $from->{$IDKEY}, $to->{$IDKEY}, $label );
+ # Add the witness if we don't have it already.
+ unless( $witnesses{$wit} ) {
+ $tradition->add_witness( sigil => $wit );
+ $witnesses{$wit} = 1;
+ }
+ } elsif( $class eq 'relationship' ) {
+ # We need the relationship type.
+ my $rel = $e->{$RELATIONSHIP_KEY};
+ warn "No relationship type for relationship edge!" unless $rel;
+ $collation->add_relationship( $rel, $from->{$IDKEY}, $to->{$IDKEY} );
+ }
}
## Deal with node information (transposition, relationships, etc.) that
## needs to be processed after all the nodes are created.
- print STDERR "Adding second-pass data\n";
+ print STDERR "Adding second-pass node data\n";
my $linear = undef;
foreach my $nkey ( keys %$extra_data ) {
foreach my $edkey ( keys %{$extra_data->{$nkey}} ) {
my $this_reading = $collation->reading( $nkey );
if( $edkey eq $TRANSPOS_KEY ) {
+ $DB::single = 1;
my $other_reading = $collation->reading( $extra_data->{$nkey}->{$edkey} );
# We evidently have a linear graph.
$linear = 1;
$this_reading->set_identical( $other_reading );
- } elsif ( $edkey eq $RANK_KEY ) {
- $this_reading->rank( $extra_data->{$nkey}->{$edkey} );
} else {
warn "Unfamiliar reading node data $edkey for $nkey";
}
projects / scpubgit/stemmatology.git / commitdiff