12 years agomake Analysis work with the new alignment table
Tara L Andrews [Fri, 13 Jan 2012 12:38:22 +0000]
make Analysis work with the new alignment table

12 years agomake GraphViz account for reading ranks
Tara L Andrews [Fri, 13 Jan 2012 11:56:43 +0000]
make GraphViz account for reading ranks

12 years agoChange alignment table to CollateX format; make version 3 of GraphML output
Tara L Andrews [Fri, 13 Jan 2012 11:46:33 +0000]
Change alignment table to CollateX format; make version 3 of GraphML output

12 years agoallow distance program specification
Tara L Andrews [Tue, 10 Jan 2012 12:32:04 +0000]
allow distance program specification

12 years agoremove path hackery for pars exe
tla [Tue, 10 Jan 2012 12:15:52 +0000]
remove path hackery for pars exe

12 years agoset up proper garbage-collecting deletion of traditions from the directory
Tara L Andrews [Sat, 7 Jan 2012 20:09:58 +0000]
set up proper garbage-collecting deletion of traditions from the directory

12 years agoget rid of HACK, allow lacunae, parse other apparatus-ese
Tara L Andrews [Fri, 6 Jan 2012 22:26:03 +0000]
get rid of HACK, allow lacunae, parse other apparatus-ese

12 years agoadd generic alignment relationship type
Tara L Andrews [Fri, 6 Jan 2012 22:25:12 +0000]
add generic alignment relationship type

12 years agofix up CTE parser, including an ugly hack I need, with new graph
Tara L Andrews [Fri, 6 Jan 2012 15:38:45 +0000]
fix up CTE parser, including an ugly hack I need, with new graph

12 years agoalso disregard inc directory
Tara L Andrews [Sun, 1 Jan 2012 02:19:54 +0000]
also disregard inc directory

12 years agoignore META.yml
Tara L Andrews [Sun, 1 Jan 2012 02:18:16 +0000]
ignore META.yml

12 years agorefrain from committing db directory; get rid of META.yml
Tara L Andrews [Sun, 1 Jan 2012 02:17:44 +0000]
refrain from committing db directory; get rid of META.yml

12 years agomake db save script use new Directory interface
Tara L Andrews [Sun, 1 Jan 2012 02:14:35 +0000]
make db save script use new Directory interface

12 years agoGet rid of Graph::Easy; add stemma tests
Tara L Andrews [Sun, 1 Jan 2012 01:57:09 +0000]
Get rid of Graph::Easy; add stemma tests

12 years agoget rid of DB halt
Tara L Andrews [Sun, 1 Jan 2012 01:36:17 +0000]
get rid of DB halt

12 years agoupdate mod requirements
Tara L Andrews [Sat, 31 Dec 2011 23:24:35 +0000]
update mod requirements

12 years agoStop polluting test output with STDERR
Tara L Andrews [Sat, 31 Dec 2011 23:24:18 +0000]
Stop polluting test output with STDERR

12 years agomake the stemma a property of the tradition
Tara L Andrews [Sat, 31 Dec 2011 23:22:45 +0000]
make the stemma a property of the tradition

12 years agogive Directory proper interface
Tara L Andrews [Thu, 29 Dec 2011 01:25:07 +0000]
give Directory proper interface

12 years agoResolve conflicts from merge of graphconvert branch
Tara L Andrews [Wed, 28 Dec 2011 02:33:50 +0000]
Resolve conflicts from merge of graphconvert branch

Conflicts:
lib/Text/Tradition/Collation.pm
lib/Text/Tradition/Collation/Relationship.pm
lib/Text/Tradition/Witness.pm

12 years agoscript updates
Tara L Andrews [Wed, 28 Dec 2011 02:16:19 +0000]
script updates

12 years agopull the rank out of the start and end nodes
Tara L Andrews [Wed, 28 Dec 2011 02:15:03 +0000]
pull the rank out of the start and end nodes

12 years agouse old 'lexical' label; handle double quotes in reading text
Tara L Andrews [Wed, 28 Dec 2011 02:14:33 +0000]
use old 'lexical' label; handle double quotes in reading text

12 years agovarious bugfixes, getting real traditions to parse
Tara L Andrews [Tue, 27 Dec 2011 01:07:16 +0000]
various bugfixes, getting real traditions to parse

12 years agoall tests now working again
Tara L Andrews [Mon, 26 Dec 2011 22:30:46 +0000]
all tests now working again

12 years agomake Self module parse old and new graphml
Tara L Andrews [Mon, 26 Dec 2011 21:04:24 +0000]
make Self module parse old and new graphml

12 years agomake tabular parse test work
Tara L Andrews [Mon, 26 Dec 2011 20:37:50 +0000]
make tabular parse test work

12 years agosort-of-fix some tests
Tara L Andrews [Mon, 26 Dec 2011 11:18:10 +0000]
sort-of-fix some tests

12 years agomake tests for Tradition.pm and Tradition/Parser/CollateX.pm work
Tara L Andrews [Mon, 26 Dec 2011 10:59:53 +0000]
make tests for Tradition.pm and Tradition/Parser/CollateX.pm work

12 years agoCollation library now backed by Graph.pm, tested with CollateX data
Tara L Andrews [Mon, 26 Dec 2011 00:25:43 +0000]
Collation library now backed by Graph.pm, tested with CollateX data

12 years agostop saving duplicate path arrays in witnesses; get rid of relationship
Tara L Andrews [Thu, 22 Dec 2011 13:30:31 +0000]
stop saving duplicate path arrays in witnesses; get rid of relationship
vectors that we don't use

12 years agochange identity pools to use KiokuDB::Set
Tara L Andrews [Thu, 22 Dec 2011 13:31:37 +0000]
change identity pools to use KiokuDB::Set

12 years agostop saving duplicate path arrays in witnesses; get rid of relationship
Tara L Andrews [Thu, 22 Dec 2011 13:30:31 +0000]
stop saving duplicate path arrays in witnesses; get rid of relationship
vectors that we don't use

12 years agoconvert Catalyst app to use KiokuDB backend
Tara L Andrews [Wed, 21 Dec 2011 22:11:11 +0000]
convert Catalyst app to use KiokuDB backend

12 years agostore tradition objects in a KiokuDB instance
Tara L Andrews [Wed, 21 Dec 2011 19:41:26 +0000]
store tradition objects in a KiokuDB instance

12 years agowe no longer use position; stop breaking relationship adding
Tara L Andrews [Wed, 21 Dec 2011 19:39:41 +0000]
we no longer use position; stop breaking relationship adding

12 years agocope with some parsing niggles
Tara L Andrews [Tue, 20 Dec 2011 13:39:27 +0000]
cope with some parsing niggles

13 years agoCTE parsing mostly works now
Tara L Andrews [Sun, 20 Nov 2011 20:06:39 +0000]
CTE parsing mostly works now

13 years agoparsing Collate apparatus more or less works now
Tara L Andrews [Sun, 20 Nov 2011 14:41:29 +0000]
parsing Collate apparatus more or less works now

13 years agoa little light refactoring
Tara L Andrews [Sun, 20 Nov 2011 14:40:43 +0000]
a little light refactoring

13 years agoadd benchmarking; turn on all files
Tara L Andrews [Thu, 17 Nov 2011 10:32:50 +0000]
add benchmarking; turn on all files

13 years agomove scripts into script/
Tara L Andrews [Sat, 5 Nov 2011 11:17:44 +0000]
move scripts into script/

13 years agojust export variants; Analysis really needs a refactor now.
Tara L Andrews [Sat, 5 Nov 2011 11:16:58 +0000]
just export variants; Analysis really needs a refactor now.

13 years agoprogress, though still not 100%
Tara L Andrews [Wed, 2 Nov 2011 22:39:41 +0000]
progress, though still not 100%

13 years agoremove deprecated Position and Segment modules
Tara L Andrews [Sun, 30 Oct 2011 21:17:22 +0000]
remove deprecated Position and Segment modules

13 years agoignore BBEdit files
Tara L Andrews [Sat, 29 Oct 2011 20:30:04 +0000]
ignore BBEdit files

13 years agostop tracking bbedit stuff; first pass at Collate! parsing
Tara L Andrews [Sat, 29 Oct 2011 20:29:26 +0000]
stop tracking bbedit stuff; first pass at Collate! parsing

13 years agowrapperize the HTML templates
Tara L Andrews [Sat, 29 Oct 2011 20:19:02 +0000]
wrapperize the HTML templates

13 years agogrey out any stemma node not in the collation
Tara L Andrews [Fri, 21 Oct 2011 20:14:28 +0000]
grey out any stemma node not in the collation

13 years agosplit tree pruning into its own function; s158 works now
Tara L Andrews [Fri, 21 Oct 2011 19:54:09 +0000]
split tree pruning into its own function; s158 works now

13 years agoalgorithm now works on 'besoin' txt, complex as it is
Tara L Andrews [Fri, 21 Oct 2011 19:04:33 +0000]
algorithm now works on 'besoin' txt, complex as it is

13 years agochange analysis graph calculation - closer but not correct yet.
Tara L Andrews [Fri, 21 Oct 2011 00:05:38 +0000]
change analysis graph calculation - closer but not correct yet.

13 years agofix bugs to do with reading relationships
Tara L Andrews [Thu, 20 Oct 2011 18:35:33 +0000]
fix bugs to do with reading relationships

13 years agomake standalone svg rendering inside an HTML page
Tara L Andrews [Mon, 10 Oct 2011 14:01:43 +0000]
make standalone svg rendering inside an HTML page

13 years agoallow division of fetch for table and SVG stemma
Tara L Andrews [Mon, 10 Oct 2011 13:57:08 +0000]
allow division of fetch for table and SVG stemma

13 years agono need for default in non-Root
Tara L Andrews [Mon, 10 Oct 2011 13:47:01 +0000]
no need for default in non-Root

13 years agoamazingly stupid pod bug
Tara L Andrews [Sat, 8 Oct 2011 14:11:36 +0000]
amazingly stupid pod bug

13 years agoMerge branch 'master' of github.com:tla/stemmatology
Tara L Andrews [Sat, 8 Oct 2011 14:06:03 +0000]
Merge branch 'master' of github.com:tla/stemmatology

13 years agoallow parameter passing too for stemmagraph service
Tara L Andrews [Sat, 8 Oct 2011 14:05:31 +0000]
allow parameter passing too for stemmagraph service

13 years agoChanged styling of selected row. Added auto styling of SVG.
Joris van Zundert [Sat, 8 Oct 2011 13:07:39 +0000]
Changed styling of selected row. Added auto styling of SVG.

13 years agoadd simple conversion service, dot to stemma graph
Tara L Andrews [Sat, 8 Oct 2011 11:31:41 +0000]
add simple conversion service, dot to stemma graph

13 years agomore test data
Tara L Andrews [Sat, 8 Oct 2011 10:56:34 +0000]
more test data

13 years agoCollateX: no ranks if nonlinear
Tara L Andrews [Thu, 6 Oct 2011 14:10:54 +0000]
CollateX: no ranks if nonlinear
Analysis: fix bug in conflict detection

13 years agoallow automatic sizing of stemma; put more data into the visualizer
Tara L Andrews [Thu, 6 Oct 2011 08:13:25 +0000]
allow automatic sizing of stemma; put more data into the visualizer

13 years agoMerge branch 'master' of github.com:tla/stemmatology
Tara L Andrews [Thu, 6 Oct 2011 07:36:25 +0000]
Merge branch 'master' of github.com:tla/stemmatology

13 years agoAdded coloting of polygons.
Joris van Zundert [Wed, 5 Oct 2011 23:24:17 +0000]
Added coloting of polygons.

13 years agoMerge branch 'master' of github.com:tla/stemmatology
Tara L Andrews [Wed, 5 Oct 2011 21:10:56 +0000]
Merge branch 'master' of github.com:tla/stemmatology

13 years agocope with multi-word graph names, catch rankless nodes
Tara L Andrews [Wed, 5 Oct 2011 21:10:46 +0000]
cope with multi-word graph names, catch rankless nodes

13 years agoChange interactive color coding.
Joris van Zundert [Wed, 5 Oct 2011 20:51:31 +0000]
Change interactive color coding.

13 years agoparse KUL text properly
Tara L Andrews [Wed, 5 Oct 2011 00:30:20 +0000]
parse KUL text properly

13 years agoadd some final statistics; try to color anonymous nodes too
Tara L Andrews [Tue, 4 Oct 2011 14:15:24 +0000]
add some final statistics; try to color anonymous nodes too

13 years agosome more look and feel tweaks
Tara L Andrews [Tue, 4 Oct 2011 00:46:35 +0000]
some more look and feel tweaks

13 years agosave the name of the text too
Tara L Andrews [Tue, 4 Oct 2011 00:46:21 +0000]
save the name of the text too

13 years agoadd conflict styling to analysis table
Tara L Andrews [Tue, 4 Oct 2011 00:19:37 +0000]
add conflict styling to analysis table

13 years agoMerge branch 'master' of github.com:tla/stemmatology
Tara L Andrews [Tue, 4 Oct 2011 00:17:13 +0000]
Merge branch 'master' of github.com:tla/stemmatology

13 years agoAdded color scheme for later reference.
Joris van Zundert [Tue, 4 Oct 2011 00:11:49 +0000]
Added color scheme for later reference.

13 years agodon't track build artifacts
Tara L Andrews [Tue, 4 Oct 2011 00:10:21 +0000]
don't track build artifacts

13 years agoMerge branch 'master' of github.com:tla/stemmatology
Joris van Zundert [Tue, 4 Oct 2011 00:02:55 +0000]
Merge branch 'master' of github.com:tla/stemmatology

13 years agoTouched styling for .genealogical.
Joris van Zundert [Tue, 4 Oct 2011 00:01:55 +0000]
Touched styling for .genealogical.

13 years agoassume UTF-8 on tabular files
Tara L Andrews [Tue, 4 Oct 2011 00:01:16 +0000]
assume UTF-8 on tabular files

13 years agoupdate parse interface; remove HTML output
Tara L Andrews [Tue, 4 Oct 2011 00:00:22 +0000]
update parse interface; remove HTML output

13 years agoremove some data files
Tara L Andrews [Mon, 3 Oct 2011 23:58:18 +0000]
remove some data files

13 years agoTouched style again.
Joris van Zundert [Mon, 3 Oct 2011 23:41:17 +0000]
Touched style again.

13 years agoTouched styling.
Joris van Zundert [Mon, 3 Oct 2011 23:36:38 +0000]
Touched styling.

13 years agoAdded a lot of files for styling.
Joris van Zundert [Mon, 3 Oct 2011 22:51:18 +0000]
Added a lot of files for styling.

13 years agoAdded styling for clicked row.
Joris van Zundert [Mon, 3 Oct 2011 22:48:44 +0000]
Added styling for clicked row.

13 years agoAdde styling.
Joris van Zundert [Mon, 3 Oct 2011 22:30:50 +0000]
Adde styling.

13 years agoMerge branch 'master' of github.com:tla/stemmatology
Joris van Zundert [Mon, 3 Oct 2011 22:09:30 +0000]
Merge branch 'master' of github.com:tla/stemmatology

13 years agoNo changes, just syncing.
Joris van Zundert [Mon, 3 Oct 2011 22:09:04 +0000]
No changes, just syncing.

13 years agoadd lacunose witnesses to html rendering
Tara L Andrews [Mon, 3 Oct 2011 22:05:50 +0000]
add lacunose witnesses to html rendering

13 years agoTried to implement node coloring.
Joris van Zundert [Mon, 3 Oct 2011 21:26:29 +0000]
Tried to implement node coloring.

13 years agocontinued doc and testing drive; rationalize GraphML a little
Tara L Andrews [Mon, 3 Oct 2011 21:15:48 +0000]
continued doc and testing drive; rationalize GraphML a little

13 years agomove around some doc/testing logic
Tara L Andrews [Mon, 3 Oct 2011 19:24:30 +0000]
move around some doc/testing logic

13 years agofix Tabular parser to account for a.c. wits; more doc and tests
Tara L Andrews [Mon, 3 Oct 2011 18:53:36 +0000]
fix Tabular parser to account for a.c. wits; more doc and tests

13 years agofix perldoc
Tara L Andrews [Mon, 3 Oct 2011 17:19:24 +0000]
fix perldoc

13 years agorestore file needed for graph.t test
Tara L Andrews [Mon, 3 Oct 2011 17:05:33 +0000]
restore file needed for graph.t test

13 years agodocument and unit-test Witness.pm
Tara L Andrews [Mon, 3 Oct 2011 17:02:14 +0000]
document and unit-test Witness.pm

13 years agoMerge branch 'master' of github.com:tla/stemmatology
Tara L Andrews [Mon, 3 Oct 2011 15:39:55 +0000]
Merge branch 'master' of github.com:tla/stemmatology

13 years agostart documenting and testing
Tara L Andrews [Mon, 3 Oct 2011 15:39:32 +0000]
start documenting and testing

13 years agochanged interface for Tradition init
Tara L Andrews [Mon, 3 Oct 2011 11:48:41 +0000]
changed interface for Tradition init