12 years agoreplace ugly layout hack with less hacky solution
Tara L Andrews [Fri, 3 Feb 2012 11:29:28 +0000]
replace ugly layout hack with less hacky solution

12 years agohuge pile of pod updates
Tara L Andrews [Fri, 3 Feb 2012 02:00:50 +0000]
huge pile of pod updates

12 years agoinitialize stemma array in tradition
Tara L Andrews [Fri, 3 Feb 2012 00:33:35 +0000]
initialize stemma array in tradition

12 years agochange shape of hack node; we no longer have to remove it
Tara L Andrews [Fri, 3 Feb 2012 00:12:15 +0000]
change shape of hack node; we no longer have to remove it

12 years agofixes for stemma retrieval and for relative paths in JS
Tara L Andrews [Thu, 2 Feb 2012 23:41:12 +0000]
fixes for stemma retrieval and for relative paths in JS

12 years agouse paths relative to our base
Tara L Andrews [Thu, 2 Feb 2012 23:23:51 +0000]
use paths relative to our base

12 years agoonly run the hack for larger graphs
Tara L Andrews [Thu, 2 Feb 2012 23:23:11 +0000]
only run the hack for larger graphs

12 years agoallow specification of options for dot/svg;
Tara L Andrews [Thu, 2 Feb 2012 20:06:51 +0000]
allow specification of options for dot/svg;
calculate ranks if necessary when calculating common readings

12 years agocalculate common readings when we parse
Tara L Andrews [Thu, 2 Feb 2012 20:06:03 +0000]
calculate common readings when we parse

12 years agoallow db user/pass specification
Tara L Andrews [Thu, 2 Feb 2012 20:05:11 +0000]
allow db user/pass specification

12 years agoallow multiple stemmas on a tradition
Tara L Andrews [Thu, 2 Feb 2012 20:04:16 +0000]
allow multiple stemmas on a tradition

12 years agoshow loading graphic while we wait; style text list
Tara L Andrews [Thu, 2 Feb 2012 15:28:31 +0000]
show loading graphic while we wait; style text list

12 years agoadd horrible hack to fix graph layout direction
Tara L Andrews [Thu, 2 Feb 2012 13:03:09 +0000]
add horrible hack to fix graph layout direction

12 years agofirst pass integration of relationship mapper
Tara L Andrews [Thu, 2 Feb 2012 04:21:17 +0000]
first pass integration of relationship mapper

12 years agodetect and mark common readings
Tara L Andrews [Wed, 1 Feb 2012 09:46:23 +0000]
detect and mark common readings

12 years agomake display graph edges reflect popularity of path
Tara L Andrews [Wed, 1 Feb 2012 00:03:44 +0000]
make display graph edges reflect popularity of path

12 years agofix return value mod in distance_trees
Tara L Andrews [Wed, 1 Feb 2012 00:03:09 +0000]
fix return value mod in distance_trees

12 years agouse hypothetical witness labels, borderless ellipses in stemma svg
Tara L Andrews [Tue, 31 Jan 2012 13:40:25 +0000]
use hypothetical witness labels, borderless ellipses in stemma svg

12 years agono escape_char either when using tab separation
Tara L Andrews [Tue, 31 Jan 2012 13:39:34 +0000]
no escape_char either when using tab separation

12 years agouse changed API for stemmadot specification
Tara L Andrews [Sun, 22 Jan 2012 00:48:36 +0000]
use changed API for stemmadot specification

12 years agoallow stemma dot to be file or string
Tara L Andrews [Sun, 22 Jan 2012 00:47:03 +0000]
allow stemma dot to be file or string

12 years agomake error page render for microservice controller
Tara L Andrews [Sun, 22 Jan 2012 00:45:04 +0000]
make error page render for microservice controller

12 years agouse simpler Directory interface
Tara L Andrews [Sat, 21 Jan 2012 23:44:14 +0000]
use simpler Directory interface

12 years agoadd proper exceptions to StemmaUtil
Tara L Andrews [Sat, 21 Jan 2012 23:43:33 +0000]
add proper exceptions to StemmaUtil

12 years agono quoting needed for tabsep files
Tara L Andrews [Sat, 21 Jan 2012 23:43:11 +0000]
no quoting needed for tabsep files

12 years agoadd exceptions to the rest of the Tradition library
Tara L Andrews [Sat, 21 Jan 2012 21:19:51 +0000]
add exceptions to the rest of the Tradition library

12 years agorestore total count; get rid of benchmarking
Tara L Andrews [Sat, 21 Jan 2012 21:18:53 +0000]
restore total count; get rid of benchmarking

12 years agosimplify Directory and add exceptions;
Tara L Andrews [Sat, 21 Jan 2012 20:06:07 +0000]
simplify Directory and add exceptions;
change reading_sequence interface;
populate ->text and ->layertext in witnesses for all 'real' parsers

12 years agoMerge branch 'master' of github.com:tla/stemmatology
Tara L Andrews [Fri, 20 Jan 2012 23:51:32 +0000]
Merge branch 'master' of github.com:tla/stemmatology

12 years agostart using witness->text and ->layertext for consistency checking
Tara L Andrews [Fri, 20 Jan 2012 23:51:20 +0000]
start using witness->text and ->layertext for consistency checking

12 years agoAdded todos.
Joris van Zundert [Fri, 20 Jan 2012 14:06:54 +0000]
Added todos.

12 years agoMerge branch 'master' of github.com:tla/stemmatology
Joris van Zundert [Fri, 20 Jan 2012 13:07:28 +0000]
Merge branch 'master' of github.com:tla/stemmatology

12 years agoScaling.
Joris van Zundert [Fri, 20 Jan 2012 13:03:49 +0000]
Scaling.

12 years agonever mind the test db; allow non-Self files to be saved to db
Tara L Andrews [Fri, 20 Jan 2012 11:18:04 +0000]
never mind the test db; allow non-Self files to be saved to db

12 years agotest db file
Tara L Andrews [Fri, 20 Jan 2012 10:52:25 +0000]
test db file

12 years agostart a real index page for traditions
Tara L Andrews [Fri, 20 Jan 2012 10:30:03 +0000]
start a real index page for traditions

12 years agorefactor get/set of relationship object on graph edge
Tara L Andrews [Thu, 19 Jan 2012 21:06:23 +0000]
refactor get/set of relationship object on graph edge

12 years agoadd displaylabel attribute that we might even use someday
Tara L Andrews [Thu, 19 Jan 2012 21:06:06 +0000]
add displaylabel attribute that we might even use someday

12 years agoremove punctuation handling logic; we will do this with relationships instead
Tara L Andrews [Wed, 18 Jan 2012 20:29:11 +0000]
remove punctuation handling logic; we will do this with relationships instead

12 years agorename TreeOfTexts to less annoying stemmaweb
Tara L Andrews [Wed, 18 Jan 2012 15:46:16 +0000]
rename TreeOfTexts to less annoying stemmaweb

12 years agorefactor the hardcoded attribute stuff in as_dot
Tara L Andrews [Wed, 18 Jan 2012 11:05:33 +0000]
refactor the hardcoded attribute stuff in as_dot

12 years agofix various bugs in subgraph rendering
Tara L Andrews [Wed, 18 Jan 2012 08:28:43 +0000]
fix various bugs in subgraph rendering

12 years agofinish reorganizing stemmaweb controllers
Tara L Andrews [Tue, 17 Jan 2012 21:51:39 +0000]
finish reorganizing stemmaweb controllers

12 years agoadd JSON alignment table parsing
Tara L Andrews [Tue, 17 Jan 2012 20:18:20 +0000]
add JSON alignment table parsing

12 years agoMerge branch 'master' of github.com:tla/stemmatology
Tara L Andrews [Tue, 17 Jan 2012 16:17:28 +0000]
Merge branch 'master' of github.com:tla/stemmatology

12 years agostart reorganization of stemmaweb structure
Tara L Andrews [Tue, 17 Jan 2012 16:17:13 +0000]
start reorganization of stemmaweb structure

12 years agoadd clear_witness functionality, use it, and update Collation pod
Tara L Andrews [Tue, 17 Jan 2012 12:40:56 +0000]
add clear_witness functionality, use it, and update Collation pod

12 years agooops, is not an object
Tara L Andrews [Tue, 17 Jan 2012 12:40:28 +0000]
oops,  is not an object

12 years agofix pod bug
Tara L Andrews [Tue, 17 Jan 2012 12:39:32 +0000]
fix pod bug

12 years agofix niggly bug in TEI parsing; test GraphML in/out
Tara L Andrews [Mon, 16 Jan 2012 22:09:37 +0000]
fix niggly bug in TEI parsing; test GraphML in/out

12 years agoparse our new GraphML format
Tara L Andrews [Mon, 16 Jan 2012 21:02:36 +0000]
parse our new GraphML format

12 years agoset up graphml output for relationships
Tara L Andrews [Mon, 16 Jan 2012 20:06:01 +0000]
set up graphml output for relationships

12 years agobreak out punctuation from the rest of the reading text
Tara L Andrews [Mon, 16 Jan 2012 18:56:27 +0000]
break out punctuation from the rest of the reading text

12 years agokeep from deleting lacuna nodes prematurely
Tara L Andrews [Mon, 16 Jan 2012 15:34:27 +0000]
keep from deleting lacuna nodes prematurely

12 years agomake lacuna nodes lacunae from the beginning
Tara L Andrews [Mon, 16 Jan 2012 15:05:03 +0000]
make lacuna nodes lacunae from the beginning

12 years agoremember to rank lacunae too
Tara L Andrews [Mon, 16 Jan 2012 14:55:34 +0000]
remember to rank lacunae too

12 years agodon't add an extra node if endrank == end->rank
Tara L Andrews [Mon, 16 Jan 2012 13:54:33 +0000]
don't add an extra node if endrank == end->rank

12 years agoadd method to generate a part of the graph specified by rank range
Tara L Andrews [Mon, 16 Jan 2012 13:43:00 +0000]
add method to generate a part of the graph specified by rank range

12 years agoMicroservice call to parse a collation and return SVG
Tara L Andrews [Mon, 16 Jan 2012 12:33:00 +0000]
Microservice call to parse a collation and return SVG

12 years agoreturn reading IDs, not reading objects, in vectors
Tara L Andrews [Mon, 16 Jan 2012 00:19:41 +0000]
return reading IDs, not reading objects, in vectors

12 years agorecalculate ranks with each new relationship, for now
Tara L Andrews [Mon, 16 Jan 2012 00:19:20 +0000]
recalculate ranks with each new relationship, for now

12 years agomake relationships into proper objects; track global ones
Tara L Andrews [Sun, 15 Jan 2012 23:44:21 +0000]
make relationships into proper objects; track global ones

12 years agoMerge branch 'master' into relationships
Tara L Andrews [Sat, 14 Jan 2012 21:53:01 +0000]
Merge branch 'master' into relationships

12 years agohandle limited parsing of 3.0 self output
Tara L Andrews [Sat, 14 Jan 2012 21:51:41 +0000]
handle limited parsing of 3.0 self output

12 years agoMerge branch 'master' into relationships
Tara L Andrews [Fri, 13 Jan 2012 22:03:36 +0000]
Merge branch 'master' into relationships

12 years agoadd run_pars functionality to the webservice, based on figtree
Tara L Andrews [Fri, 13 Jan 2012 22:03:08 +0000]
add run_pars functionality to the webservice, based on figtree

12 years agomove more procedural stuff out of Stemma.pm into StemmaUtil
Tara L Andrews [Fri, 13 Jan 2012 19:33:56 +0000]
move more procedural stuff out of Stemma.pm into StemmaUtil

12 years agosplit stemma lib into util and object; make phylip_input microservice
Tara L Andrews [Fri, 13 Jan 2012 16:08:10 +0000]
split stemma lib into util and object; make phylip_input microservice

12 years agomake svg background transparent; fix test for TEI bugfix
Tara L Andrews [Fri, 13 Jan 2012 15:48:09 +0000]
make svg background transparent; fix test for TEI bugfix

12 years agoMerge branch 'master' into relationships
Tara L Andrews [Fri, 13 Jan 2012 15:04:40 +0000]
Merge branch 'master' into relationships

12 years agofix a.c. paths for parallel segmentation input
Tara L Andrews [Fri, 13 Jan 2012 14:11:11 +0000]
fix a.c. paths for parallel segmentation input

12 years agofix some bugs for alignment table with object refs
Tara L Andrews [Fri, 13 Jan 2012 12:56:10 +0000]
fix some bugs for alignment table with object refs

12 years agomake Analysis work with the new alignment table
Tara L Andrews [Fri, 13 Jan 2012 12:38:22 +0000]
make Analysis work with the new alignment table

12 years agomake GraphViz account for reading ranks
Tara L Andrews [Fri, 13 Jan 2012 11:56:43 +0000]
make GraphViz account for reading ranks

12 years agoChange alignment table to CollateX format; make version 3 of GraphML output
Tara L Andrews [Fri, 13 Jan 2012 11:46:33 +0000]
Change alignment table to CollateX format; make version 3 of GraphML output

12 years agostart of relationship mapper
Tara L Andrews [Thu, 12 Jan 2012 16:24:59 +0000]
start of relationship mapper

12 years agoallow distance program specification
Tara L Andrews [Tue, 10 Jan 2012 12:32:04 +0000]
allow distance program specification

12 years agoremove path hackery for pars exe
tla [Tue, 10 Jan 2012 12:15:52 +0000]
remove path hackery for pars exe

12 years agoset up proper garbage-collecting deletion of traditions from the directory
Tara L Andrews [Sat, 7 Jan 2012 20:09:58 +0000]
set up proper garbage-collecting deletion of traditions from the directory

12 years agoget rid of HACK, allow lacunae, parse other apparatus-ese
Tara L Andrews [Fri, 6 Jan 2012 22:26:03 +0000]
get rid of HACK, allow lacunae, parse other apparatus-ese

12 years agoadd generic alignment relationship type
Tara L Andrews [Fri, 6 Jan 2012 22:25:12 +0000]
add generic alignment relationship type

12 years agofix up CTE parser, including an ugly hack I need, with new graph
Tara L Andrews [Fri, 6 Jan 2012 15:38:45 +0000]
fix up CTE parser, including an ugly hack I need, with new graph

12 years agoalso disregard inc directory
Tara L Andrews [Sun, 1 Jan 2012 02:19:54 +0000]
also disregard inc directory

12 years agoignore META.yml
Tara L Andrews [Sun, 1 Jan 2012 02:18:16 +0000]
ignore META.yml

12 years agorefrain from committing db directory; get rid of META.yml
Tara L Andrews [Sun, 1 Jan 2012 02:17:44 +0000]
refrain from committing db directory; get rid of META.yml

12 years agomake db save script use new Directory interface
Tara L Andrews [Sun, 1 Jan 2012 02:14:35 +0000]
make db save script use new Directory interface

12 years agoGet rid of Graph::Easy; add stemma tests
Tara L Andrews [Sun, 1 Jan 2012 01:57:09 +0000]
Get rid of Graph::Easy; add stemma tests

12 years agoget rid of DB halt
Tara L Andrews [Sun, 1 Jan 2012 01:36:17 +0000]
get rid of DB halt

12 years agoupdate mod requirements
Tara L Andrews [Sat, 31 Dec 2011 23:24:35 +0000]
update mod requirements

12 years agoStop polluting test output with STDERR
Tara L Andrews [Sat, 31 Dec 2011 23:24:18 +0000]
Stop polluting test output with STDERR

12 years agomake the stemma a property of the tradition
Tara L Andrews [Sat, 31 Dec 2011 23:22:45 +0000]
make the stemma a property of the tradition

12 years agogive Directory proper interface
Tara L Andrews [Thu, 29 Dec 2011 01:25:07 +0000]
give Directory proper interface

12 years agoResolve conflicts from merge of graphconvert branch
Tara L Andrews [Wed, 28 Dec 2011 02:33:50 +0000]
Resolve conflicts from merge of graphconvert branch

Conflicts:
lib/Text/Tradition/Collation.pm
lib/Text/Tradition/Collation/Relationship.pm
lib/Text/Tradition/Witness.pm

12 years agoscript updates
Tara L Andrews [Wed, 28 Dec 2011 02:16:19 +0000]
script updates

12 years agopull the rank out of the start and end nodes
Tara L Andrews [Wed, 28 Dec 2011 02:15:03 +0000]
pull the rank out of the start and end nodes

12 years agouse old 'lexical' label; handle double quotes in reading text
Tara L Andrews [Wed, 28 Dec 2011 02:14:33 +0000]
use old 'lexical' label; handle double quotes in reading text

12 years agovarious bugfixes, getting real traditions to parse
Tara L Andrews [Tue, 27 Dec 2011 01:07:16 +0000]
various bugfixes, getting real traditions to parse

12 years agoall tests now working again
Tara L Andrews [Mon, 26 Dec 2011 22:30:46 +0000]
all tests now working again

12 years agomake Self module parse old and new graphml
Tara L Andrews [Mon, 26 Dec 2011 21:04:24 +0000]
make Self module parse old and new graphml

12 years agomake tabular parse test work
Tara L Andrews [Mon, 26 Dec 2011 20:37:50 +0000]
make tabular parse test work