From: Tara L Andrews Date: Fri, 15 Apr 2011 10:58:22 +0000 (+0200) Subject: Initial library X-Git-Url: http://git.shadowcat.co.uk/gitweb/gitweb.cgi?a=commitdiff_plain;h=b49c431805cca61890ecc70a6869ec7988367834;p=scpubgit%2Fstemmatology.git Initial library --- b49c431805cca61890ecc70a6869ec7988367834 diff --git a/lib/Traditions/Graph.pm b/lib/Traditions/Graph.pm new file mode 100644 index 0000000..64042c9 --- /dev/null +++ b/lib/Traditions/Graph.pm @@ -0,0 +1,432 @@ +package Traditions::Graph; + +use strict; +use warnings; +use Graph::Easy; +use IPC::Run qw( run binary ); +use Module::Load; + +sub new { + my $proto = shift; + my $class = ref( $proto ) || $proto; + my %opts = ( 'on_color' => 'yellow', + 'off_color' => 'white', + @_ ); + my $self = {}; + + # opts can be: GraphML, base+CSV, base+CTE, TEI. We need + # something to parse. + my @formats = grep { /^(GraphML|CSV|CTE|TEI)$/ } keys( %opts ); + my $format = shift( @formats ); + unless( $format ) { + warn "No data given to create a graph: need GraphML, CSV, or TEI"; + return; + } + if( $format =~ /^(CSV|CTE)$/ && !exists $opts{'base'} ) { + warn "Cannot make a graph from $format without a base text"; + return; + } + + # Make a graph object. + my $collation_graph = Graph::Easy->new(); + $collation_graph->set_attribute( 'node', 'shape', 'ellipse' ); + # Starting point for all texts + my $last_node = $collation_graph->add_node( '#START#' ); + + $self->{'graph'} = $collation_graph; + bless( $self, $class ); + + # Now do the parsing. + my $mod = "Traditions::Parser::$format"; + load( $mod ); + my @args = ( $opts{ $format } ); + if( $format =~ /^(CSV|CTE)$/ ) { + push( @args, $opts{'base'} ); + } + $mod->can('parse')->( $self, @args ); + + return $self; +} + + +### Graph::Easy object accessor methods +sub node { + my $self = shift; + return $self->{'graph'}->node( @_ ); +} + +sub edge { + my $self = shift; + return $self->{'graph'}->edge( @_ ); +} + +sub add_node { + my $self = shift; + return $self->{'graph'}->add_node( @_ ); +} + +sub add_edge { + my $self = shift; + return $self->{'graph'}->add_edge( @_ ); +} + +sub del_node { + my $self = shift; + return $self->{'graph'}->del_node( @_ ); +} + +sub del_edge { + my $self = shift; + return $self->{'graph'}->del_edge( @_ ); +} + +sub nodes { + my $self = shift; + return $self->{'graph'}->nodes( @_ ); +} + +sub edges { + my $self = shift; + return $self->{'graph'}->edges( @_ ); +} + +sub merge_nodes { + my $self = shift; + return $self->{'graph'}->merge_nodes( @_ ); +} + +### Helper methods for navigating the tree + +sub start { + # Return the beginning node of the graph. + my $self = shift; + my( $new_start ) = @_; + if( $new_start ) { + $self->{'graph'}->rename_node( $new_start, '#START#' ); + } + return $self->{'graph'}->node('#START#'); +} + +sub save_positions { + my( $self, $positions ) = @_; + $self->{'positions'} = $positions; +} + +sub next_word { + # Return the successor via the corresponding edge. + my( $self, $node, $edge ) = @_; + $edge = "base text" unless $edge; + my @next_edges = $node->outgoing(); + return undef unless scalar( @next_edges ); + + foreach my $e ( @next_edges ) { + next unless $e->label() eq $edge; + return $e->to(); + } + + warn "Could not find node connected to edge $edge"; + return undef; +} + +sub prior_word { + # Return the predecessor via the corresponding edge. + my( $self, $node, $edge ) = @_; + $edge = "base text" unless $edge; + my @prior_edges = $node->incoming(); + return undef unless scalar( @prior_edges ); + + foreach my $e ( @prior_edges ) { + next unless $e->label() eq $edge; + return $e->from(); + } + + warn "Could not find node connected from edge $edge"; + return undef; +} + +sub node_sequence { + my( $self, $start, $end, $label ) = @_; + # TODO make label able to follow a single MS + unless( ref( $start ) eq 'Graph::Easy::Node' + && ref( $end ) eq 'Graph::Easy::Node' ) { + warn "Called node_sequence without two nodes!"; + return (); + } + $label = 'base text' unless $label; + my @nodes = ( $start ); + my %seen; + my $n = $start; + while( $n ne $end ) { + if( exists( $seen{$n->name()} ) ) { + warn "Detected loop at " . $n->name(); + last; + } + $seen{$n->name()} = 1; + + my @edges = $n->outgoing(); + my @relevant_edges = grep { $_->label =~ /^$label$/ } @edges; + warn "Did not find an edge $label from node " . $n->label + unless scalar @relevant_edges; + warn "Found more than one edge $label from node " . $n->label + unless scalar @relevant_edges == 1; + my $next = $relevant_edges[0]->to(); + push( @nodes, $next ); + $n = $next; + } + # Check that the last node is our end node. + my $last = $nodes[$#nodes]; + warn "Last node found from " . $start->label() . + " via path $label is not the end!" + unless $last eq $end; + + return @nodes; +} + +sub string_lemma { + my( $self, $start, $end, $label ) = @_; + + my @nodes = $self->node_sequence( $start, $end, $label ); + my @words = map { $_->label() } @nodes; + return join( ' ', @words ); +} + +## Output. We use GraphViz for the layout because it handles large +## graphs better than Graph::Easy does natively. + +sub as_svg { + my( $self, $recalc ) = @_; + return $self->{'svg'} if( exists $self->{'svg'} && !$recalc ); + + $self->{'graphviz'} = $self->{'graph'}->as_graphviz() + unless( exists $self->{'graphviz'} && !$recalc ); + + my @cmd = qw/dot -Tsvg/; + my( $svg, $err ); + my $in = $self->{'graphviz'}; + run( \@cmd, \$in, ">", binary(), \$svg ); + $self->{'svg'} = $svg; + return $svg; +} + +1; +__END__ +#### EXAMINE BELOW #### + +# Returns a list of the nodes that are currently on and the nodes for +# which an ellipsis needs to stand in. Optionally takes a list of +# nodes that have just been turned off, to include in the list. +sub active_nodes { + my( $self, @toggled_off_nodes ) = @_; + + my $all_nodes = {}; + map { $all_nodes->{ $_ } = $self->_find_position( $_ ) } keys %{$self->{node_state}}; + my $positions = _invert_hash( $all_nodes ); + my $positions_off = {}; + map { $positions_off->{ $all_nodes->{$_} } = $_ } @toggled_off_nodes; + + # Now for each position, we have to see if a node is on, and we + # have to see if a node has been turned off. + my @answer; + foreach my $pos ( @{$self->{_all_positions}} ) { + my $nodes = $positions->{$pos}; + + # See if there is an active node for this position. + my @active_nodes = grep { $self->{node_state}->{$_} == 1 } @$nodes; + warn "More than one active node at position $pos!" + unless scalar( @active_nodes ) < 2; + my $active; + if( scalar( @active_nodes ) ) { + $active = $self->node_to_svg( $active_nodes[0] ); + } + + # Is there a formerly active node that was toggled off? + if( exists( $positions_off->{$pos} ) ) { + my $off_node = $self->node_to_svg( $positions_off->{$pos} ); + if( $active ) { + push( @answer, [ $off_node, 0 ], [ $active, 1 ] ); + } elsif ( scalar @$nodes == 1 ) { + # This was the only node at its position. No ellipsis. + push( @answer, [ $off_node, 0 ] ); + } else { + # More than one node at this position, none now active. + # Restore the ellipsis. + push( @answer, [ $off_node, undef ] ); + } + # No formerly active node, so we just see if there is a currently + # active one. + } elsif( $active ) { + # Push the active node, whatever it is. + push( @answer, [ $active, 1 ] ); + } else { + # There is no change here; we need an ellipsis. Use + # the first node in the list, arbitrarily. + push( @answer, [ $self->node_to_svg( $nodes->[0] ), undef ] ); + } + } + + return @answer; +} + +# Compares two nodes according to their positions in the witness +# index hash. +sub _by_position { + my $self = shift; + return _cmp_position( $self->_find_position( $a ), + $self->_find_position( $b ) ); +} + +# Takes two position strings (X,Y) and sorts them. +sub _cmp_position { + my @pos_a = split(/,/, $a ); + my @pos_b = split(/,/, $b ); + + my $big_cmp = $pos_a[0] <=> $pos_b[0]; + return $big_cmp if $big_cmp; + # else + return $pos_a[1] <=> $pos_b[1]; +} + +# Finds the position of a node in the witness index hash. Warns if +# the same node has non-identical positions across witnesses. Quite +# possibly should not warn. +sub _find_position { + my $self = shift; + my $node = shift; + + my $position; + foreach my $wit ( keys %{$self->{indices}} ) { + if( exists $self->{indices}->{$wit}->{$node} ) { + if( $position && $self->{indices}->{$wit}->{$node} ne $position ) { + warn "Position for node $node varies between witnesses"; + } + $position = $self->{indices}->{$wit}->{$node}; + } + } + + warn "No position found for node $node" unless $position; + return $position; +} + +sub _invert_hash { + my ( $hash, $plaintext_keys ) = @_; + my %new_hash; + foreach my $key ( keys %$hash ) { + my $val = $hash->{$key}; + my $valkey = $val; + if( $plaintext_keys + && ref( $val ) ) { + $valkey = $plaintext_keys->{ scalar( $val ) }; + warn( "No plaintext value given for $val" ) unless $valkey; + } + if( exists ( $new_hash{$valkey} ) ) { + push( @{$new_hash{$valkey}}, $key ); + } else { + $new_hash{$valkey} = [ $key ]; + } + } + return \%new_hash; +} + + +# Takes a node ID to toggle; returns a list of nodes that are +# turned OFF as a result. +sub toggle_node { + my( $self, $node_id ) = @_; + $node_id = $self->node_from_svg( $node_id ); + + # Is it a common node? If so, we don't want to turn it off. + # Later we might want to allow it off, but give a warning. + if( grep { $_ =~ /^$node_id$/ } @{$self->{common_nodes}} ) { + return (); + } + + my @nodes_off; + # If we are about to turn on a node... + if( !$self->{node_state}->{$node_id} ) { + # Turn on the node. + $self->{node_state}->{$node_id} = 1; + # Turn off any other 'on' nodes in the same position. + push( @nodes_off, $self->colocated_nodes( $node_id ) ); + # Turn off any node that is an identical transposed one. + push( @nodes_off, $self->identical_nodes( $node_id ) ) + if $self->identical_nodes( $node_id ); + } else { + push( @nodes_off, $node_id ); + } + + # Turn off the nodes that need to be turned off. + map { $self->{node_state}->{$_} = 0 } @nodes_off; + return @nodes_off; +} + +sub node_from_svg { + my( $self, $node_id ) = @_; + # TODO: implement this for real. Need a mapping between SVG titles + # and GraphML IDs, as created in make_graphviz. + $node_id =~ s/^node_//; + return $node_id; +} + +sub node_to_svg { + my( $self, $node_id ) = @_; + # TODO: implement this for real. Need a mapping between SVG titles + # and GraphML IDs, as created in make_graphviz. + $node_id = "node_$node_id"; + return $node_id; +} + +sub colocated_nodes { + my( $self, $node ) = @_; + my @cl; + + # Get the position of the stated node. + my $position; + foreach my $index ( values %{$self->{indices}} ) { + if( exists( $index->{$node} ) ) { + if( $position && $position ne $index->{$node} ) { + warn "Two ms positions for the same node!"; + } + $position = $index->{$node}; + } + } + + # Now find the other nodes in that position, if any. + foreach my $index ( values %{$self->{indices}} ) { + my %location = reverse( %$index ); + push( @cl, $location{$position} ) + if( exists $location{$position} + && $location{$position} ne $node ); + } + return @cl; +} + +sub identical_nodes { + my( $self, $node ) = @_; + return undef unless exists $self->{transpositions} && + exists $self->{transpositions}->{$node}; + return $self->{transpositions}->{$node}; +} + +sub text_for_witness { + my( $self, $wit ) = @_; + # Get the witness name + my %wit_id_for = reverse %{$self->{witnesses}}; + my $wit_id = $wit_id_for{$wit}; + unless( $wit_id ) { + warn "Could not find an ID for witness $wit"; + return; + } + + my $path = $self->{indices}->{$wit_id}; + my @nodes = sort { $self->_cmp_position( $path->{$a}, $path->{$b} ) } keys( %$path ); + my @words = map { $self->text_of_node( $_ ) } @nodes; + return join( ' ', @words ); +} + +sub text_of_node { + my( $self, $node_id ) = @_; + my $xpath = '//g:node[@id="' . $self->node_from_svg( $node_id) . + '"]/g:data[@key="' . $self->{nodedata}->{token} . '"]/child::text()'; + return $self->{xpc}->findvalue( $xpath ); +} +1; diff --git a/lib/Traditions/Parser/BaseText.pm b/lib/Traditions/Parser/BaseText.pm new file mode 100644 index 0000000..e4bfd4a --- /dev/null +++ b/lib/Traditions/Parser/BaseText.pm @@ -0,0 +1,286 @@ +package Traditions::Parser::BaseText; + +use strict; +use warnings; +use Exporter 'import'; +use vars qw( @EXPORT_OK ); +@EXPORT_OK = qw( merge_base ); + +sub merge_base { + my( $graph, $base_file, @app_entries ) = @_; + my @base_line_starts = read_base( $base_file, $graph ); + + foreach my $app ( @app_entries ) { + my( $line, $num ) = split( /\./, $app->{_id} ); + # DEBUG with a short graph + # last if $line > 2; + my $scrutinize = "21.8"; + my $first_line_node = $base_line_starts[ $line ]; + my $too_far = $base_line_starts[ $line+1 ]; + + my $lemma = $app->{rdg_0}; + my $seq = 1; + # Is this the Nth occurrence of this reading in the line? + if( $lemma =~ s/(_)?(\d)$// ) { + $seq = $2; + } + my @lemma_words = split( /\s+/, $lemma ); + + # Now search for the lemma words within this line. + my $lemma_start = $first_line_node; + my $lemma_end; + my %seen; + while( $lemma_start ne $too_far ) { + # Loop detection + if( $seen{ $lemma_start->name() } ) { + warn "Detected loop at " . $lemma_start->name() . + ", ref $line,$num"; + last; + } + $seen{ $lemma_start->name() } = 1; + + # Try to match the lemma. + my $unmatch = 0; + print STDERR "Matching " . cmp_str( $lemma_start) . " against " . + $lemma_words[0] . "...\n" + if "$line.$num" eq $scrutinize; + if( cmp_str( $lemma_start ) eq $lemma_words[0] ) { + # Skip it if we need a match that is not the first. + if( --$seq < 1 ) { + # Now we have to compare the rest of the words here. + if( scalar( @lemma_words ) > 1 ) { + my $next_node = $graph->next_word( $lemma_start ); + foreach my $w ( @lemma_words[1..$#lemma_words] ) { + printf STDERR "Now matching %s against %s\n", + cmp_str($next_node), $w + if "$line.$num" eq $scrutinize; + if( $w ne cmp_str($next_node) ) { + $unmatch = 1; + last; + } else { + $lemma_end = $next_node; + $next_node = $graph->next_word( $lemma_end ); + } + } + } else { + $lemma_end = $lemma_start; + } + } else { + $unmatch = 1; + } + } + last unless ( $unmatch || !defined( $lemma_end ) ); + $lemma_end = undef; + $lemma_start = $graph->next_word( $lemma_start ); + } + + unless( $lemma_end ) { + warn "No match found for @lemma_words at $line.$num"; + next; + } else { + # These are no longer common nodes; unmark them as such. + my @lemma_nodes = $graph->node_sequence( $lemma_start, + $lemma_end ); + map { $_->set_attribute( 'class', 'lemma' ) } @lemma_nodes; + } + + # Now we have our lemma nodes; we add the variant nodes to the graph. + + # For each reading that is not rdg_0, we make a chain of nodes + # and connect them to the anchor. Edges are named after the mss + # that are relevant. + foreach my $k ( grep { /^rdg/ } keys( %$app ) ) { + next if $k eq 'rdg_0'; # that's the lemma. + my @variant = split( /\s+/, $app->{$k} ); + @variant = () if $app->{$k} eq '/'; # This is an omission. + my @mss = grep { $app->{$_} eq $k } keys( %$app ); + + unless( @mss ) { + print STDERR "Skipping '@variant' at $line.$num: no mss\n"; + next; + } + + # Determine the label name for the edges here. + my $edge_name = join(', ', @mss ); + + # Make the variant into a set of nodes. + my $ctr = 0; + my $last_node = $graph->prior_word( $lemma_start ); + my $var_start; + foreach my $vw ( @variant ) { + my $vwname = "$k/$line.$num.$ctr"; $ctr++; + my $vwnode = $graph->add_node( $vwname ); + $vwnode->set_attribute( 'label', $vw ); + $vwnode->set_attribute( 'class', 'variant' ); + $graph->add_edge( $last_node, $vwnode, $edge_name ); + $var_start = $vwnode unless $var_start; + $last_node = $vwnode; + } + # Now hook it up at the end. + $graph->add_edge( $last_node, $graph->next_word( $lemma_end ), + $edge_name ); + + # Now collate and collapse the identical nodes within the graph. + collate_variant( $graph, $lemma_start, $lemma_end, + $var_start, $last_node ); + + } + } + + ## Now in theory I have a graph. I want to make it a little easier to + ## read. So I collapse nodes that have only one edge in and one edge + ## out, and I do this by looking at the edges. + + foreach my $edge ( $graph->edges() ) { + my @out_edges = $edge->from()->outgoing(); + my @in_edges = $edge->to()->incoming(); + + next unless scalar( @out_edges ) == 1; + next unless scalar( @in_edges ) == 1; + next unless $out_edges[0] eq $in_edges[0]; + # In theory if we've got this far, we're safe, but just to + # double-check... + next unless $out_edges[0] eq $edge; + + $graph->merge_nodes( $edge->from(), $edge->to(), ' ' ); + } +} + +# read_base: Takes a text file and a (presumed empty) graph object, +# adds the words as simple linear nodes to the graph, and returns a +# list of nodes that represent the beginning of lines. This graph is +# now the starting point for application of apparatus entries in +# merge_base, e.g. from a CSV file or a CTE file. + +sub read_base { + my( $base_file, $graph ) = @_; + + # This array gives the first node for each line. We put the + # common starting point in line zero. + my $last_node = $graph->start(); + my $lineref_array = [ $last_node ]; # There is no line zero. + + open( BASE, $base_file ) or die "Could not open file $base_file: $!"; + while() { + # Make the nodes, and connect them up for the base, but also + # save the first node of each line in an array for the purpose. + chomp; + my @words = split; + my $started = 0; + my $wordref = 0; + my $lineref = scalar @$lineref_array; + foreach my $w ( @words ) { + my $noderef = join( ',', $lineref, ++$wordref ); + my $node = $graph->add_node( $noderef ); + $node->set_attribute( 'label', $w ); + $node->set_attribute( 'class', 'common' ); + unless( $started ) { + push( @$lineref_array, $node ); + $started = 1; + } + if( $last_node ) { + $graph->add_edge( $last_node, $node, "base text" ); + $last_node = $node; + } # TODO there should be no else here... + } + } + close BASE; + # Ending point for all texts + my $endpoint = $graph->add_node( '#END#' ); + $graph->add_edge( $last_node, $endpoint, "base text" ); + push( @$lineref_array, $endpoint ); + + return( @$lineref_array ); +} + + +## Helper methods for merge_base + +sub collate_variant { + my( $graph, $lemma_start, $lemma_end, $var_start, $var_end ) = @_; + # If var_start is undef, then the variant is an omission and + # there's nothing to collate. Return. + return unless $var_start; + + # I want to look at the nodes in the variant and lemma, and + # collapse nodes that are the same word. This is mini-collation. + my %collapsed = (); + # There will only be one outgoing edge at first, so this is safe. + my @out = $var_start->outgoing(); + my $var_label = $out[0]->label(); + + my @lemma_nodes; + while( $lemma_start ne $lemma_end ) { + push( @lemma_nodes, $lemma_start ); + $lemma_start = $graph->next_word( $lemma_start ); + } + push( @lemma_nodes, $lemma_end ); + + my @variant_nodes; + while( $var_start ne $var_end ) { + push( @variant_nodes, $var_start ); + $var_start = $graph->next_word( $var_start, $var_label ); + } + push( @variant_nodes, $var_end ); + + # Go through the variant nodes, and if we find a lemma node that + # hasn't yet been collapsed with a node, equate them. + + foreach my $w ( @variant_nodes ) { + my $word = $w->label(); + foreach my $l ( @lemma_nodes ) { + if( $word eq cmp_str( $l ) ) { + next if exists( $collapsed{ $l->label } ) + && $collapsed{ $l->label } eq $l; + # Collapse the nodes. + printf STDERR "Merging nodes %s/%s and %s/%s\n", + $l->name, $l->label, $w->name, $w->label; + $graph->merge_nodes( $l, $w ); + $collapsed{ $l->label } = $l; + # Now collapse any multiple edges to and from the node. + # Rely on the presence of the 'base text' edge. + remove_duplicate_edges( $graph, $graph->prior_word( $l ), $l ); + remove_duplicate_edges( $graph, $l, $graph->next_word( $l ) ); + } + } + } +} + +sub remove_duplicate_edges { + my( $graph, $from, $to ) = @_; + my @edges = $from->edges_to( $to ); + if( scalar @edges > 1 ) { + my @base = grep { $_->label eq 'base text' } @edges; + if ( scalar @base ) { + # Remove the edges that are not base. + foreach my $e ( @edges ) { + $graph->del_edge( $e ) + unless $e eq $base[0]; + } + } else { + # Combine the edges into one. + my $new_edge_name = join( ', ', map { $_->label() } @edges ); + my $new_edge = shift @edges; + $new_edge->set_attribute( 'label', $new_edge_name ); + foreach my $e ( @edges ) { + $graph->del_edge( $e ); + } + } + } +} + +# TODO need to make this configurable! +sub cmp_str { + my( $node ) = @_; + my $word = $node->label(); + $word = lc( $word ); + $word =~ s/\W//g; + $word =~ s/v/u/g; + $word =~ s/j/i/g; + $word =~ s/cha/ca/g; + $word =~ s/quatuor/quattuor/g; + $word =~ s/ioannes/iohannes/g; + return $word; +} + +1; diff --git a/lib/Traditions/Parser/CSV.pm b/lib/Traditions/Parser/CSV.pm new file mode 100644 index 0000000..7ad8a61 --- /dev/null +++ b/lib/Traditions/Parser/CSV.pm @@ -0,0 +1,97 @@ +package Traditions::Parser::CSV; + +use strict; +use warnings; +use Text::CSV::Simple; +use Traditions::Parser::BaseText qw( merge_base ); + +# Takes a CSV file and a base text; returns a GraphML object. + +sub parse { + my( $graph, $csv_file, $base_text ) = @_; + + # Parse the CSV file into a list of apparatus entries. + my @app_list = read_csv( $csv_file ); + # Now put the base text onto the graph, and merge in the + # apparatus entries. + merge_base( $graph, $base_text, @app_list ); +} + +# Takes a CSV file; returns a data structure of apparatus entries to +# be merged with a base text. + +sub read_csv { + my( $csv_file ) = @_; + my $parser = Text::CSV::Simple->new(); + my @fields = qw/ reference text variant type context non_corr non_indep + length total origin /; + my @lines = $parser->read_file( $ARGV[0] ); + my @labels = @{shift( @lines )}; + push( @fields, @labels[10..$#labels] ); + + my $started = 0; + my $rdg_ctr = 0; + my $apparatus = {}; + my @app_list; + foreach my $line ( @lines ) { + my $new_lemma = 0; + if( $line->[0] =~ /^\d/ ) { + $new_lemma = $started = 1; + } + next unless $started; + + # Get the lines into their fields. + my %linehash; + @linehash{@fields} = @$line; + + # Readings can take up multiple lines in the CSV, so append the + # apparatus to the list, and clear it out, if we have started a + # new reading. + if( $new_lemma ) { + push( @app_list, $apparatus ) if keys %$apparatus; + $apparatus = { _id => $linehash{reference}, + }; + $rdg_ctr = 0; + } + # The apparatus has multiple readings, and multiple witnesses per + # reading. So it's a hashref whose values are listrefs. + $apparatus->{ 'rdg_0' } = $linehash{ 'text' } + if $linehash{ 'text' }; + $apparatus->{ 'rdg_' . ++$rdg_ctr } = $linehash{ 'variant' }; + foreach my $attr ( @fields[3..8] ) { + $apparatus->{"_rdg_${rdg_ctr}_$attr"} = $linehash{ $attr } + if $linehash{ $attr }; + } + + foreach my $k ( @fields[10..$#fields] ) { + my $variant_rdg = $linehash{$k}; + $k =~ s/\s+\(a\.c\.\)//; + if( $variant_rdg =~ /^0/ ) { + $apparatus->{ $k } = 'rdg_0' + unless exists $apparatus->{ $k }; + } elsif ( $variant_rdg =~ /^1/ ) { + $apparatus->{ $k } = 'rdg_' . $rdg_ctr; + } else { # else for $, we don't list the MS + warn "Unparsed variant indicator $variant_rdg for $k in " . + $apparatus->{'_id'} + unless ( !$variant_rdg or $variant_rdg =~ /^\$$/ ); + } + } + # See if we have at least one reading for each variant. + my @seen_rdgs = values %$apparatus; + foreach my $rdg ( grep { $_ =~ /^rdg/ } keys %$apparatus ) { + unless( grep { $_ =~ /^$rdg$/ } @seen_rdgs ) { + print STDERR 'No manuscript found with reading "' + . $apparatus->{$rdg} . + '" at location ' . $apparatus->{_id} . "\n"; + # delete $apparatus->{$rdg}; # for now + } + } + } + # Done with loop, so push the last apparatus. + push( @app_list, $apparatus ); + return @app_list; +} + +1; + diff --git a/lib/Traditions/Parser/GraphML.pm b/lib/Traditions/Parser/GraphML.pm new file mode 100644 index 0000000..5915505 --- /dev/null +++ b/lib/Traditions/Parser/GraphML.pm @@ -0,0 +1,188 @@ +package Traditions::Parser::GraphML; + +use strict; +use warnings; +use Traditions::Graph; +use XML::LibXML; +use XML::LibXML::XPathContext; + + +# Takes a GraphML string; returns a Graph::Easy object. + +sub parse { + my( $graph, $graphml_str ) = @_; + + my $parser = XML::LibXML->new(); + my $doc = $parser->parse_string( $graphml_str ); + my $collation = $doc->documentElement(); + my $xpc = XML::LibXML::XPathContext->new( $collation ); + $xpc->registerNs( 'g', 'http://graphml.graphdrawing.org/xmlns' ); + + # First get the ID keys, for witnesses and for collation data + my %nodedata; + my %witnesses; + foreach my $k ( $xpc->findnodes( '//g:key' ) ) { + # Each key has a 'for' attribute; the edge keys are witnesses, and + # the node keys contain an ID and string for each node. + + if( $k->getAttribute( 'for' ) eq 'node' ) { + $nodedata{ $k->getAttribute( 'attr.name' ) } = $k->getAttribute( 'id' ); + } else { + $witnesses{ $k->getAttribute( 'id' ) } = $k->getAttribute( 'attr.name' ); + } + } + + my $graph_el = $xpc->find( '/g:graphml/g:graph' )->[0]; + + # Add the nodes to the graph. First delete the start node, because + # GraphML graphs will have their own start nodes. + $graph->del_node( $graph->start() ); + # Map from XML IDs to node name/identity + my %node_name; + # Keep track of whatever extra info we're passed + my $extra_data = {}; + my @nodes = $xpc->findnodes( '//g:node' ); + foreach my $n ( @nodes ) { + my $lookup_xpath = './g:data[@key="%s"]/child::text()'; + my $id = $xpc->findvalue( sprintf( $lookup_xpath, $nodedata{'number'} ), $n ); + my $label = $xpc->findvalue( sprintf( $lookup_xpath, $nodedata{'token'} ), $n ); + my $gnode = $graph->add_node( $id ); + $node_name{ $n->getAttribute('id') } = $id; + $gnode->set_attribute( 'label', $label ); + + # Now get the rest of the data + my $extra = {}; + my @keys = grep { $_ !~ /^(number|token)$/ } keys( %nodedata ); + foreach my $k ( @keys ) { + my $data = $xpc->findvalue( sprintf( $lookup_xpath, $nodedata{ $k } ), $n ); + $extra->{ $k } = $data; + } + $extra_data->{ $id } = $extra; + } + + # Now add the edges. + my @edges = $xpc->findnodes( '//g:edge' ); + foreach my $e ( @edges ) { + my $from = $node_name{ $e->getAttribute('source') }; + my $to = $node_name{ $e->getAttribute('target') }; + # Label according to the witnesses present. + my @wit_ids = $xpc->findnodes( './g:data/attribute::key', $e ); + my @wit_names = map { $witnesses{ $_->getValue() } } @wit_ids; + my $label = join( ', ', @wit_names ); + + $graph->add_edge( $from, $to, $label ); + } + + ## Reverse the node_name hash so that we have two-way lookup. + my %node_id = reverse %node_name; + ## TODO mark transpositions somehow. + + # Find the beginning and end nodes of the graph. The beginning node + # has no incoming edges; the end node has no outgoing edges. + my( $begin_node, $end_node ); + foreach my $gnode ( $graph->nodes() ) { + print STDERR "Checking node " . $gnode->name . "\n"; + my @outgoing = $gnode->outgoing(); + my @incoming = $gnode->incoming(); + + unless( scalar @incoming ) { + warn "Already have a beginning node" if $begin_node; + my $node_xml_id = $node_id{ $gnode->name() }; + my @bn = $xpc->findnodes( '//g:node[@id="' . $node_xml_id . '"]' ); + warn "XPath did not find a node for id $node_xml_id" + unless scalar @bn; + $begin_node = $bn[0]; + $graph->start( $gnode ); + $node_name{ 0 } = '#START#'; + $node_id{'#START#'} = 0; + } + unless( scalar @outgoing ) { + warn "Already have an ending node" if $end_node; + my $node_xml_id = $node_id{ $gnode->name() }; + my @bn = $xpc->findnodes( '//g:node[@id="' . $node_xml_id . '"]' ); + warn "XPath did not find a node for id $node_xml_id" + unless scalar @bn; + $end_node = $bn[0]; + } + } + + # Now for each witness, walk the path through the graph. + # Then we need to find the common nodes. + # TODO This method is going to fall down if we have a very gappy + # text in the collation. + # TODO think about whether it makes more sense to do this in the + # XML or in the graph. Right now it's the XML. + my $paths = {}; + my @common_nodes; + foreach my $wit ( keys %witnesses ) { + my $node_id = $begin_node->getAttribute('id'); + my @wit_path = ( $node_name{ $node_id } ); + # TODO Detect loops at some point + while( $node_id != $end_node->getAttribute('id') ) { + # Find the node which is the target of the edge whose + # source is $node_id and applies to this witness. + my $xpath_expr = '//g:edge[child::g:data[@key="' + . $wit . '"] and attribute::source="' + . $node_id . '"]'; + my $next_edge = $xpc->find( $xpath_expr, $graph_el )->[0]; + $node_id = $next_edge->getAttribute('target'); + push( @wit_path, $node_name{ $node_id } ); + } + $paths->{ $witnesses{ $wit }} = \@wit_path; + if( @common_nodes ) { + my @cn; + foreach my $n ( @wit_path) { + push( @cn, $n ) if grep { $_ eq $n } @common_nodes; + } + @common_nodes = (); + push( @common_nodes, @cn ); + } else { + push( @common_nodes, @wit_path ); + } + } + + # Mark all the nodes as either common or not. + foreach my $cn ( @common_nodes ) { + print STDERR "Setting $cn as common node\n"; + $graph->node( $cn )->set_attribute( 'class', 'common' ); + } + foreach my $n ( $graph->nodes() ) { + $n->set_attribute( 'class', 'variant' ) + unless $n->get_attribute( 'class' ) eq 'common'; + } + + # And then we have to calculate the position identifiers for + # each word, keyed on the common nodes. This will be 'fun'. + # The end result is a hash per witness, whose key is the word + # node and whose value is its position in the text. Common + # nodes are always N,1 so have identical positions in each text. + my $wit_indices = {}; + my $positions = {}; + foreach my $wit ( values %witnesses ) { + my $wit_matrix = []; + my $cn = 0; + my $row = []; + foreach my $wn ( @{$paths->{$wit}} ) { + if( $wn eq $common_nodes[$cn] ) { + $cn++; + push( @$wit_matrix, $row ) if scalar( @$row ); + $row = []; + } + push( @$row, $wn ); + } + push( @$wit_matrix, $row ); + # Now we have a matrix; we really want to invert this. + my $wit_index; + foreach my $li ( 1..scalar(@$wit_matrix) ) { + foreach my $di ( 1..scalar(@{$wit_matrix->[$li-1]}) ) { + $wit_index->{ $wit_matrix->[$li-1]->[$di-1] } = "$li,$di"; + $positions->{ "$li,$di" } = 1; + } + } + + $wit_indices->{$wit} = $wit_index; + } + $graph->save_positions( $positions, $wit_indices ); +} + +1; diff --git a/lib/Traditions/Parser/TEI.pm b/lib/Traditions/Parser/TEI.pm new file mode 100644 index 0000000..e69de29 diff --git a/lib/Traditions/Schema.pm b/lib/Traditions/Schema.pm new file mode 100644 index 0000000..d6161d7 --- /dev/null +++ b/lib/Traditions/Schema.pm @@ -0,0 +1,20 @@ +package Traditions::Schema; + +# Created by DBIx::Class::Schema::Loader +# DO NOT MODIFY THE FIRST PART OF THIS FILE + +use strict; +use warnings; + +use base 'DBIx::Class::Schema'; + +__PACKAGE__->load_namespaces; + + +# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-10-19 17:34:43 +# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:iZNRQ5HMUi7/5s+iC1WPmg + +my $database = '/home/tla/stemmatology/db/traditions.db'; +__PACKAGE__->connection( "dbi:SQLite:dbname=$database" ); + +1; diff --git a/lib/Traditions/Schema/Result/Collation.pm b/lib/Traditions/Schema/Result/Collation.pm new file mode 100644 index 0000000..d1dcaa6 --- /dev/null +++ b/lib/Traditions/Schema/Result/Collation.pm @@ -0,0 +1,89 @@ +package Traditions::Schema::Result::Collation; + +# Created by DBIx::Class::Schema::Loader +# DO NOT MODIFY THE FIRST PART OF THIS FILE + +use strict; +use warnings; + +use base 'DBIx::Class::Core'; + + +=head1 NAME + +Traditions::Schema::Result::Collation + +=cut + +__PACKAGE__->table("collations"); + +=head1 ACCESSORS + +=head2 collationid + + data_type: 'integer' + is_auto_increment: 1 + is_nullable: 0 + +=head2 text + + data_type: 'integer' + is_foreign_key: 1 + is_nullable: 0 + +=head2 tag + + data_type: 'text' + is_nullable: 1 + +=cut + +__PACKAGE__->add_columns( + "collationid", + { data_type => "integer", is_auto_increment => 1, is_nullable => 0 }, + "text", + { data_type => "integer", is_foreign_key => 1, is_nullable => 0 }, + "tag", + { data_type => "text", is_nullable => 1 }, +); +__PACKAGE__->set_primary_key("collationid"); + +=head1 RELATIONS + +=head2 readings + +Type: has_many + +Related object: L + +=cut + +__PACKAGE__->has_many( + "readings", + "Traditions::Schema::Result::Reading", + { "foreign.collation" => "self.collationid" }, + { cascade_copy => 0, cascade_delete => 0 }, +); + +=head2 text + +Type: belongs_to + +Related object: L + +=cut + +__PACKAGE__->belongs_to( + "text", + "Traditions::Schema::Result::Text", + { textid => "text" }, + { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" }, +); + + +# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-10-19 17:34:43 +# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:+l31v5NCx//HtluCu+1JeQ + + +# You can replace this text with custom content, and it will be preserved on regeneration +1; diff --git a/lib/Traditions/Schema/Result/Manuscript.pm b/lib/Traditions/Schema/Result/Manuscript.pm new file mode 100644 index 0000000..a5aaec1 --- /dev/null +++ b/lib/Traditions/Schema/Result/Manuscript.pm @@ -0,0 +1,124 @@ +package Traditions::Schema::Result::Manuscript; + +# Created by DBIx::Class::Schema::Loader +# DO NOT MODIFY THE FIRST PART OF THIS FILE + +use strict; +use warnings; + +use base 'DBIx::Class::Core'; + + +=head1 NAME + +Traditions::Schema::Result::Manuscript + +=cut + +__PACKAGE__->table("manuscripts"); + +=head1 ACCESSORS + +=head2 manuscriptid + + data_type: 'integer' + is_auto_increment: 1 + is_nullable: 0 + +=head2 text + + data_type: 'integer' + is_foreign_key: 1 + is_nullable: 0 + +=head2 description + + data_type: 'text' + is_nullable: 0 + +=head2 sigil + + data_type: 'text' + is_nullable: 0 + +=head2 first_word + + data_type: 'integer' + is_foreign_key: 1 + is_nullable: 1 + +=cut + +__PACKAGE__->add_columns( + "manuscriptid", + { data_type => "integer", is_auto_increment => 1, is_nullable => 0 }, + "text", + { data_type => "integer", is_foreign_key => 1, is_nullable => 0 }, + "description", + { data_type => "text", is_nullable => 0 }, + "sigil", + { data_type => "text", is_nullable => 0 }, + "first_word", + { data_type => "integer", is_foreign_key => 1, is_nullable => 1 }, +); +__PACKAGE__->set_primary_key("manuscriptid"); + +=head1 RELATIONS + +=head2 first_word + +Type: belongs_to + +Related object: L + +=cut + +__PACKAGE__->belongs_to( + "first_word", + "Traditions::Schema::Result::Reading", + { readingid => "first_word" }, + { + is_deferrable => 1, + join_type => "LEFT", + on_delete => "CASCADE", + on_update => "CASCADE", + }, +); + +=head2 text + +Type: belongs_to + +Related object: L + +=cut + +__PACKAGE__->belongs_to( + "text", + "Traditions::Schema::Result::Text", + { textid => "text" }, + { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" }, +); + +=head2 readings + +Type: has_many + +Related object: L + +=cut + +__PACKAGE__->has_many( + "readings", + "Traditions::Schema::Result::Reading", + { "foreign.manuscript" => "self.manuscriptid" }, + { cascade_copy => 0, cascade_delete => 0 }, +); + + +# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-10-19 17:34:43 +# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:71XIOYGQBGADyQrj4WE49Q + + +# You can replace this text with custom content, and it will be preserved on regeneration +1; diff --git a/lib/Traditions/Schema/Result/Reading.pm b/lib/Traditions/Schema/Result/Reading.pm new file mode 100644 index 0000000..e336406 --- /dev/null +++ b/lib/Traditions/Schema/Result/Reading.pm @@ -0,0 +1,212 @@ +package Traditions::Schema::Result::Reading; + +# Created by DBIx::Class::Schema::Loader +# DO NOT MODIFY THE FIRST PART OF THIS FILE + +use strict; +use warnings; + +use base 'DBIx::Class::Core'; + + +=head1 NAME + +Traditions::Schema::Result::Reading + +=cut + +__PACKAGE__->table("readings"); + +=head1 ACCESSORS + +=head2 readingid + + data_type: 'integer' + is_auto_increment: 1 + is_nullable: 0 + +=head2 prior_reading + + data_type: 'integer' + is_foreign_key: 1 + is_nullable: 1 + +=head2 next_reading + + data_type: 'integer' + is_foreign_key: 1 + is_nullable: 1 + +=head2 readingtext + + data_type: 'text' + is_nullable: 0 + +=head2 ante_corr + + data_type: 'text' + is_nullable: 1 + +=head2 manuscript + + data_type: 'integer' + is_foreign_key: 1 + is_nullable: 0 + +=head2 collation + + data_type: 'integer' + is_foreign_key: 1 + is_nullable: 1 + +=cut + +__PACKAGE__->add_columns( + "readingid", + { data_type => "integer", is_auto_increment => 1, is_nullable => 0 }, + "prior_reading", + { data_type => "integer", is_foreign_key => 1, is_nullable => 1 }, + "next_reading", + { data_type => "integer", is_foreign_key => 1, is_nullable => 1 }, + "readingtext", + { data_type => "text", is_nullable => 0 }, + "ante_corr", + { data_type => "text", is_nullable => 1 }, + "manuscript", + { data_type => "integer", is_foreign_key => 1, is_nullable => 0 }, + "collation", + { data_type => "integer", is_foreign_key => 1, is_nullable => 1 }, +); +__PACKAGE__->set_primary_key("readingid"); +__PACKAGE__->add_unique_constraint("next_reading_unique", ["next_reading"]); +__PACKAGE__->add_unique_constraint("prior_reading_unique", ["prior_reading"]); + +=head1 RELATIONS + +=head2 manuscripts + +Type: has_many + +Related object: L + +=cut + +__PACKAGE__->has_many( + "manuscripts", + "Traditions::Schema::Result::Manuscript", + { "foreign.first_word" => "self.readingid" }, + { cascade_copy => 0, cascade_delete => 0 }, +); + +=head2 collation + +Type: belongs_to + +Related object: L + +=cut + +__PACKAGE__->belongs_to( + "collation", + "Traditions::Schema::Result::Collation", + { collationid => "collation" }, + { + is_deferrable => 1, + join_type => "LEFT", + on_delete => "CASCADE", + on_update => "CASCADE", + }, +); + +=head2 manuscript + +Type: belongs_to + +Related object: L + +=cut + +__PACKAGE__->belongs_to( + "manuscript", + "Traditions::Schema::Result::Manuscript", + { manuscriptid => "manuscript" }, + { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" }, +); + +=head2 next_reading + +Type: belongs_to + +Related object: L + +=cut + +__PACKAGE__->belongs_to( + "next_reading", + "Traditions::Schema::Result::Reading", + { readingid => "next_reading" }, + { + is_deferrable => 1, + join_type => "LEFT", + on_delete => "CASCADE", + on_update => "CASCADE", + }, +); + +=head2 reading_next_reading + +Type: might_have + +Related object: L + +=cut + +__PACKAGE__->might_have( + "reading_next_reading", + "Traditions::Schema::Result::Reading", + { "foreign.next_reading" => "self.readingid" }, + { cascade_copy => 0, cascade_delete => 0 }, +); + +=head2 prior_reading + +Type: belongs_to + +Related object: L + +=cut + +__PACKAGE__->belongs_to( + "prior_reading", + "Traditions::Schema::Result::Reading", + { readingid => "prior_reading" }, + { + is_deferrable => 1, + join_type => "LEFT", + on_delete => "CASCADE", + on_update => "CASCADE", + }, +); + +=head2 reading_prior_reading + +Type: might_have + +Related object: L + +=cut + +__PACKAGE__->might_have( + "reading_prior_reading", + "Traditions::Schema::Result::Reading", + { "foreign.prior_reading" => "self.readingid" }, + { cascade_copy => 0, cascade_delete => 0 }, +); + + +# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-10-19 17:34:43 +# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:ze+1/h74nB4r9fc6AGIIkQ + + +# You can replace this text with custom content, and it will be preserved on regeneration +1; diff --git a/lib/Traditions/Schema/Result/Text.pm b/lib/Traditions/Schema/Result/Text.pm new file mode 100644 index 0000000..80712e2 --- /dev/null +++ b/lib/Traditions/Schema/Result/Text.pm @@ -0,0 +1,88 @@ +package Traditions::Schema::Result::Text; + +# Created by DBIx::Class::Schema::Loader +# DO NOT MODIFY THE FIRST PART OF THIS FILE + +use strict; +use warnings; + +use base 'DBIx::Class::Core'; + + +=head1 NAME + +Traditions::Schema::Result::Text + +=cut + +__PACKAGE__->table("texts"); + +=head1 ACCESSORS + +=head2 textid + + data_type: 'integer' + is_auto_increment: 1 + is_nullable: 0 + +=head2 provenance + + data_type: 'text' + is_nullable: 0 + +=head2 description + + data_type: 'text' + is_nullable: 1 + +=cut + +__PACKAGE__->add_columns( + "textid", + { data_type => "integer", is_auto_increment => 1, is_nullable => 0 }, + "provenance", + { data_type => "text", is_nullable => 0 }, + "description", + { data_type => "text", is_nullable => 1 }, +); +__PACKAGE__->set_primary_key("textid"); + +=head1 RELATIONS + +=head2 manuscripts + +Type: has_many + +Related object: L + +=cut + +__PACKAGE__->has_many( + "manuscripts", + "Traditions::Schema::Result::Manuscript", + { "foreign.text" => "self.textid" }, + { cascade_copy => 0, cascade_delete => 0 }, +); + +=head2 collations + +Type: has_many + +Related object: L + +=cut + +__PACKAGE__->has_many( + "collations", + "Traditions::Schema::Result::Collation", + { "foreign.text" => "self.textid" }, + { cascade_copy => 0, cascade_delete => 0 }, +); + + +# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-10-19 17:34:43 +# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:nRxu7u/rg6k397lkxT3IWQ + + +# You can replace this text with custom content, and it will be preserved on regeneration +1; diff --git a/t/01app.t b/t/01app.t new file mode 100644 index 0000000..77eadc8 --- /dev/null +++ b/t/01app.t @@ -0,0 +1,8 @@ +#!/usr/bin/env perl +use strict; +use warnings; +use Test::More tests => 2; + +BEGIN { use_ok 'Catalyst::Test', 'lemmatizer' } + +ok( request('/')->is_success, 'Request should succeed' ); diff --git a/t/02pod.t b/t/02pod.t new file mode 100644 index 0000000..3d1bab1 --- /dev/null +++ b/t/02pod.t @@ -0,0 +1,10 @@ +#!/usr/bin/env perl +use strict; +use warnings; +use Test::More; + +eval "use Test::Pod 1.14"; +plan skip_all => 'Test::Pod 1.14 required' if $@; +plan skip_all => 'set TEST_POD to enable this test' unless $ENV{TEST_POD}; + +all_pod_files_ok(); diff --git a/t/03podcoverage.t b/t/03podcoverage.t new file mode 100644 index 0000000..4e1c6e7 --- /dev/null +++ b/t/03podcoverage.t @@ -0,0 +1,10 @@ +#!/usr/bin/env perl +use strict; +use warnings; +use Test::More; + +eval "use Test::Pod::Coverage 1.04"; +plan skip_all => 'Test::Pod::Coverage 1.04 required' if $@; +plan skip_all => 'set TEST_POD to enable this test' unless $ENV{TEST_POD}; + +all_pod_coverage_ok(); diff --git a/t/data/Collatex-16.xml b/t/data/Collatex-16.xml new file mode 100644 index 0000000..2a32a56 --- /dev/null +++ b/t/data/Collatex-16.xml @@ -0,0 +1,197 @@ + + + + + + + + + + + # + 0 + + + when + 1 + + + april + 2 + 9 + + + with his + 3 + + + showers sweet with + 8 + + + april + 9 + 2 + + + fruit + 12 + + + the + 13 + + + drought + 14 + 18 + + + march + 15 + 17 + + + of + 16 + + + march + 17 + 15 + + + drought + 18 + 14 + + + has + 19 + + + pierced + 20 + + + unto + 21 + + + to + 22 + + + the + 23 + + + root + 24 + + + rood + 26 + + + # + 27 + + + A + B + C + + + A + + + A + + + A + + + A + + + B + C + + + B + C + + + B + C + + + A + B + C + + + A + C + + + B + + + A + C + + + B + + + A + C + + + B + + + A + C + + + B + + + A + B + C + + + A + + + B + + + A + + + B + + + A + B + + + C + + + C + + + A + B + + + C + + + diff --git a/t/data/collate.svg b/t/data/collate.svg new file mode 100644 index 0000000..55ba73d --- /dev/null +++ b/t/data/collate.svg @@ -0,0 +1,254 @@ + + +]> + + + + +test + + +node_0 + +# + + +node_1 + +when + + +node_0->node_1 + + +A, B, C + + +node_2 + +april with his showers sweet with + + +node_1->node_2 + + +A + + +node_8 + +showers sweet with april + + +node_1->node_8 + + +B, C + + +node_12 + +fruit + + +node_2->node_12 + + +A + + +node_8->node_12 + + +B, C + + +node_13 + +the + + +node_12->node_13 + + +A, B, C + + +node_14 + +drought + + +node_13->node_14 + + +A, C + + +node_15 + +march + + +node_13->node_15 + + +B + + +node_16 + +of + + +node_14->node_16 + + +A, C + + +node_15->node_16 + + +B + + +node_17 + +march + + +node_16->node_17 + + +A, C + + +node_18 + +drought + + +node_16->node_18 + + +B + + +node_19 + +has + + +node_17->node_19 + + +A, C + + +node_18->node_19 + + +B + + +node_20 + +pierced + + +node_19->node_20 + + +A, B, C + + +node_21 + +unto + + +node_20->node_21 + + +A + + +node_22 + +to + + +node_20->node_22 + + +B + + +node_23 + +the + + +node_20->node_23 + + +C + + +node_21->node_23 + + +A + + +node_22->node_23 + + +B + + +node_24 + +root + + +node_23->node_24 + + +A, B + + +node_26 + +rood + + +node_23->node_26 + + +C + + +node_27 + +# + + +node_24->node_27 + + +A, B + + +node_26->node_27 + + +C + + + diff --git a/t/data/shari_base.txt b/t/data/shari_base.txt new file mode 100644 index 0000000..8c5a439 --- /dev/null +++ b/t/data/shari_base.txt @@ -0,0 +1,152 @@ +1. Praedestinatis nemo nocere valet. Apostolum beatum audivimus exhortantem et +confirmantem nos, cum diceret nobis: Si Deus pro nobis, quis contra nos? Pro quibus autem +sit Deus, superius ostendit, ubi ait: quos autem praedestinavit, illos et vocavit; quos autem +vocavit, illos et justificavit; quos autem justificavit, illos et glorificavit. Quid ergo dicemus ad +haec? Si Deus pro nobis, quis contra nos? Deus pro nobis, ut praedestinaret nos; Deus pro +nobis, ut vocaret nos; Deus pro nobis, ut justificaret nos; Deus pro nobis, ut glorificaret nos. Si +Deus pro nobis, quis contra nos? Praedestinavit, antequam essemus; vocavit, cum aversi +essemus; justificavit, cum peccatores essemus; glorificavit, cum mortales essemus. Si Deus +pro nobis, quis contra nos? Praedestinatis a Deo, vocatis, justificatis, glorificatis, qui vult +adversari, paret se, si potest bellare adversus Deum. Ubi enim audivimus, Si Deus pro nobis, +quis contra nos? nisi qui Deum vincit, non laedit nos. Et quis est qui vincit Omnipotentem? +Quicumque reluctari voluerit, sibi nocet. Hoc est, quod et Paulo adhuc Saulo de coelo +Christus clamavit: Non tibi expedit contra stimulum calcitrare. Saeviat, saeviat quantum +potest; qui calces adversus stimulum mittit, nonne in se ipsum saevit? 2. Deus nobis debitor +factus ex promissis. In his autem quatuor rebus, quas commendavit Apostolus insignes, quae +pertinent ad eos pro quibus est Deus, id est, praedestinatione, vocatione, +justificatione, glorificatione; in his ergo quatuor rebus considerare debemus quid jam +habeamus, et quid adhuc exspectemus. In his enim quae jam habemus, laudemus Deum +largitorem: in his quae nondum habemus, teneamus debitorem. Debitor enim factus est, non +aliquid a nobis accipiendo, sed quod ei placuit promittendo. Aliter enim dicimus homini, +Debes mihi quia dedi tibi: et aliter dicimus, Debes mihi, quia promisisti mihi. Quando dicis, +Debes mihi, quia dedi tibi: a te processit beneficium, sed mutuatum, non donatum. Quando +autem dicis, Debes mihi, quia promisisti mihi: tu nihil dedisti, et tamen exigis. Bonitas enim +ejus qui promisit, dabit, ne in malitiam fides convertatur. Qui enim fallit, malus est, Deo +autem numquid dicimus, Redde mihi, quia dedi tibi? Quid dedimus Deo, quando totum quod +sumus, et quod habemus boni, ab illo habemus? Nihil ergo ei dedimus. Non est +quemadmodum ista voce exigamus debitorem Deum, maxime dicente nobis Apostolo, Quis +enim cognovit sensum Domini? aut quis consiliarius ejus fuit? aut quis prior dedit illi, et +retribuetur ei? Illo ergo modo possumus exigere Dominum nostrum, ut dicamus: Redde quod +promisisti, quia fecimus quod jussisti: et hoc tu fecisti, quia laborantes juvisti. 3. Vocati et +praedestinati sumus gratis. Nemo ergo dicat: Ideo me vocavit Deus, quia colui Deum. +Quomodo coluisses, si vocatus non fuisses? Si propterea te vocavit Deus, quia coluisti Deum: +ergo prior dedisti, et retribuit tibi. Nonne istam tibi vocem Apostolus tollit, cum dicit, Aut quis +prior dedit illi, et retribuetur ei? Sed ecce quando vocatus es, vel jam eras. Quomodo +praedestinareris, nisi quando non eras? Quid Deo dedisti, quando qui aliquid dares, non eras? +Quid ergo fecit Deus, quando praedestinavit qui non erat? Quod ait Apostolus: Qui vocat ea +quae non sunt, tanquam ea quae sunt. Si jam esses, non praedestinareris; nisi aversus esses, +non vocareris; nisi impius esses, non justificareris, nisi terrenus et abjectus esses, non +glorificareris. Quis ergo prior dedit illi, et retribuetur ei? Quoniam ex ipso, et per ipsum, et in +ipso sunt omnia. Quid ergo reddimus? Ipsi gloria. Quia non eramus, quando sumus +praedestinati; quia aversi eramus, quando sumus vocati; quia peccatores eramus, quando +sumus justificati: agamus Deo gratias, ne remaneamus ingrati. 4. Justificati utrum jam simus. +Lucta hic in justificatis manens. Proposueramus autem considerare de his quatuor rebus quid +jam consecuti fuerimus, quid adhuc adipiscendum exspectemus. Praedestinati enim jam +sumus et antequam essemus. Vocati sumus, quando christiani facti sumus. Jam ergo et hoc +habemus. Justificati, quid? Quid est, justificati? Audemus dicere, jam hoc tertium habere nos? +Et erit quisquam nostrum qui audeat dicere, Justus sum? Puto enim hoc esse, Justus sum, +quod est, peccator non sum. Si audes hoc dicere, occurrit tibi Joannes: Si dixerimus quia +peccatum non habemus, nos ipsos decipimus, et veritas in nobis non est. Quid ergo? Nihil +habemus de justitia? An habemus, sed non totum habemus? Hoc ergo quaeramus. Si enim +aliquid habemus, et aliquid non habemus; crescat quod habemus, et implebitur quod non +habemus. Ecce enim baptizati sunt homines, omnia illis peccata dimissa sunt, justificati sunt a +peccatis; negare non possumus: restat tamen lucta cum carne, restat lucta cum mundo, restat +lucta cum diabolo. Qui autem luctatur, aliquando ferit, aliquando percutitur; aliquando vincit, +aliquando perimitur: quomodo de stadio exeat attenditur. Nam si dixerimus quia peccatum +non habemus, nos ipsos decipimus, et veritas in nobis non est. Item, si dixerimus quia justitiae +nihil habemus, adversum Dei dona mentimur. Si enim justitiae nihil habemus, nec fidem +habemus: si fidem non habemus, christiani non sumus. Si autem fidem habemus, jam aliquid +habemus justitiae. Ipsum aliquid, vis nosse quantum sit? Justus ex fide vivit): justus, inquam, +ex fide vivit; quia credit quod non videt. 5. Justificatio aliqua vere per fidem. Patres, arietes +sancti, duces Apostoli, quando annuntiaverunt, non solum viderunt oculis, sed etiam manibus +tractaverunt: et tamen Dominus servans nobis donum fidei, cuidam discipulorum suorum +tractanti, palpanti, veritatem digitis inquirenti et invenienti, exclamanti, Dominus meus et +Deus meus; ait ipse Dominus et Deus, Quia vidisti, credidisti. Et nos futuros intuens: Beati, +inquit, qui non viderunt et crediderunt. Non vidimus, audivimus, et credidimus. Beati +praedicti sumus, et de justitia nihil habemus? Venit Dominus carnaliter ad Judaeos, et occisus +est: non venit ad nos, et acceptus est. Populus quem non cognovi, servivit mihi, in obauditu +auris obedivit mihi. Nos sumus, et de justitia nihil habemus? Omnino habemus. Grati simus +ex eo quod habemus: ut addatur quod non habemus, et non perdamus quod habemus. Ergo et +hoc tertium jam agitur in nobis. Justificati sumus: sed ipsa justitia, cum proficimus, crescit. Et +quomodo crescit dicam, et vobiscum quodam modo conferam; ut unusquisque vestrum jam in +ipsa justificatione constitutus, accepta scilicet remissione peccatorum per lavacrum +regenerationis, accepto Spiritu sancto, proficiens de die in diem, videat ubi sit, accedat, +proficiat et crescat, donec consummetur, non ut finiatur, sed ut perficiatur. 6. Fides justificans +a fide daemonum discernitur per spem et charitatem. Spes. Charitas. Incipit homo a fide: quid +pertinet ad fidem? Credere. Sed adhuc ista fides discernatur ab immundis spiritibus. Ad fidem +quid pertinet? Credere. Sed ait apostolus Jacobus: Et daemones credunt, et contremiscunt. Si +tantum credis, et sine spe vivis, vel dilectionem non habes: Et daemones credunt, et +contremiscunt. Quid magnum est, si dicis Christum Filium Dei? Hoc dixit Petrus, et audivit, +Beatus es Simon Bar Jona: hoc dixerunt daemones, et audierunt, Obmutescite. Ille beatus, +dicitur ei, Quia non revelavit tibi caro et sanguis, sed Pater meus qui in coelis est. Illi autem +audiunt, Obmutescite: et hoc ipsum dicunt, et repelluntur. Una vox est: sed Dominus radicem +interrogat, non florem. Unde dicitur ad Hebraeos: Ne qua radix amaritudinis sursum +germinans molestet, et per illam contaminentur multi. Prius ergo discerne fidem tuam a fide +daemonis. Unde eam discernis? Daemones hoc dixerunt timendo, Petrus amando. Adde ergo +fidei spem. Et quae spes est, nisi de aliqua conscientiae bonitate? Speique ipsi adde +charitatem. Desuper eminentem viam habemus, dicente Apostolo, Supereminentem viam +vobis demonstro: Si linguis hominum loquar et Angelorum, charitatem autem non habeam, +factus sum velut aeramentum sonans, aut cymbalum tinniens: et caetera enarrat bona, et sine +charitate nihil prodesse confirmat. Maneant ergo haec, fides, spes, charitas: major autem +horum charitas. Sectamini charitatem. Discernite ergo fidem vestram. Jam estis de +praedestinatis, vocatis, justificatis. Paulus Apostolus dicit: Neque circumcisio aliquid valet, +neque praeputium; sed fides. Dic adhuc, Apostole, adde, discerne; quia, Et daemones credunt +et contremiscunt: ergo adde et discerne, daemones enim credunt, et contremiscunt quod +oderunt. Distingue, Apostole, et circumcide fidem meam, et discerne causam meam de gente +non sancta. Plane distinguit, discernit, circumcidit. Et fides, inquit, quae per dilectionem +operatur. 7. Cultus gratuitus Dei. Qui solus animam satiat. Unusquisque ergo, fratres mei, +inspiciat se intus, appendat se, probet se in omnibus factis suis, bonis operibus suis, quae +faciat cum charitate, non exspectans retributionem temporalem, sed promissum Dei, faciem +Dei. Non enim quidquid tibi Deus promittit, valet aliquid praeter ipsum Deum. Omnino me +non satiaret Deus, nisi promitteret mihi se ipsum Deum. Quid est tota terra? Quid est totum +mare? Quid est totum coelum? Quid sunt omnia sidera? Quid sol? Quid luna? Quid exercitus +Angelorum? Omnium istorum Creatorem sitio: ipsum esurio, ipsum sitio, ipsi dico, Quoniam +apud te est fons vitae. Qui mihi dicit: Ego sum panis qui de coelo descendi. Esuriat et sitiat +peregrinatio mea, ut satietur praesentia mea. Arridet mundus multis rebus, pulchris, fortibus, +variis: pulchrior est ille qui fecit, fortior et clarior ille qui fecit, suavior ille est qui fecit. +Satiabor, cum manifestabitur gloria tua. Fides ergo quae per dilectionem operatur si est in +vobis, jam pertinetis ad praedestinatos, vocatos, justificatos: ergo crescat in vobis. Fides enim +quae per dilectionem operatur, sine spe esse non potest. Cum autem venerimus, jam erit ibi +fides? dicetur nobis, Crede? Non utique. Videbimus eum, contemplabimur eum. Dilectissimi, +filii Dei sumus, et nondum apparuit quod erimus. Quia nondum apparuit, ideo fides. Filii Dei +sumus, praedestinati, vocati, justificati: filii Dei sumus, et nondum apparuit quod erimus. +Modo ergo fides, antequam appareat quod erimus. Scimus quod cum apparuerit, similes ei +erimus. Numquid quia credimus? Non. Quare ergo? Quoniam videbimus eum sicuti est. 8. +Spes, in hac peregrinatione solatium. Quid spes? erit ibi? Spes jam non erit, quando erit res. +Etenim ipsa spes peregrinationi necessaria est, ipsa est quae consolatur in via. Viator enim +quando laborat ambulando, ideo laborem tolerat, quia pervenire sperat. Tolle illi spem +perveniendi, continuo franguntur vires ambulandi. Ergo et spes quae hic est, ad justitiam +pertinet peregrinationis nostrae. Ipsum Apostolum audi: Adoptionem, inquit, exspectantes, in +nobismetipsis ingemiscimus adhuc. Ubi est gemitus, jam non potest dici illa felicitas, de qua +Scriptura dicit, Transiit labor et gemitus. Ergo adhuc, inquit, in nobismetipsis ingemiscimus, +adoptionem exspectantes redemptionem corporis nostri. Adhuc ingemiscimus. Quare? Spe +enim salvi facti sumus. Spes autem quae videtur, non est spes. Si enim videt quis, quid sperat? +Si autem quod non videmus speramus, per patientiam exspectamus. In hac ergo patientia +martyres coronabantur; desiderabant quae non videbant, contemnebant quae ferebant. In hac +spe dicebant: Quis nos separabit a charitate Christi? Tribulatio? an angustia? an persecutio? +an fames? an nuditas? an gladius? Quia propter te. Et ubi est propter quem? Quia propter te, +inquit, mortificamur tota die. Propter te. Et ubi est, Beati qui non viderunt et crediderunt? +Ecce ubi est, in te est, quia et fides ipsa in te ipso est. An fallit nos Apostolus, qui dicit +habitare Christum per fidem in cordibus nostris? Modo per fidem, tunc per speciem: modo +per fidem, quamdiu in via, quamdiu in peregrinatione. Quamdiu enim sumus in corpore, +peregrinamur a Domino: per fidem enim ambulamus, non per speciem. 9. Deus beatis erit +omnia in omnibus. Charitas sola semper manet. Si hoc est fides, quid erit species? Audi quid +erit: Ut sit Deus omnia in omnibus. Quid est, Omnia? Quidquid hic quaerebas, quidquid hic +pro magno habebas, ipse tibi erit. Quid hic volebas, quid amabas? Manducare et bibere? Ipse +tibi erit cibus, ipse tibi erit potus. Quid hic volebas? Sanitatem corporis fragilem, +transeuntem? Ipse tibi immortalitas erit. Quid hic quaerebas? Divitias? Avare, quid enim tibi +sufficit, si Deus ipse non sufficit? Sed quid amabas? Gloriam, honores? Deus tibi erit gloria: +cui et modo dicitur, Gloria mea, et exaltans caput meum. Jam enim exaltavit caput meum. +Caput nostrum Christus est. Sed quid miraris? Quia caput et caetera membra exaltabuntur; +tunc erit Deus omnia in omnibus. Hoc modo credimus, hoc modo speramus: cum venerimus, +tenebimus; et jam visio erit, non fides: cum venerimus, tenebimus, et jam res erit, non spes. +Charitas quid? numquid et ipsa modo est, et tunc non erit? Si amamus credendo et non +videndo; quomodo amabimus videndo et tenendo? Ergo charitas erit, sed perfecta erit: sicut +Apostolus ait, Fides, spes, charitas, tria haec; major autem horum charitas. Hanc habentes, et +in nobis nutrientes, securi illo adjuvante perseverantes in eo, dicamus: Quis nos separabit a +charitate Christi? donec ipse misereatur, ipse perficiat. Tribulatio? an angustia? an fames? +an nuditas? an periculum? an gladius? Quoniam propter te mortificamur tota die, deputati +sumus ut oves occisionis. Et quis supportat? quis omnia tolerat? Sed in his omnibus +superamus. Unde? Per eum qui dilexit nos. Ergo, Si Deus pro nobis, quis contra nos? + + diff --git a/t/data/shari_data.csv b/t/data/shari_data.csv new file mode 100644 index 0000000..9c8ff24 --- /dev/null +++ b/t/data/shari_data.csv @@ -0,0 +1,746 @@ +Reference S. 158,Latin text,,Type,,Weight,,,,Origin,Va1 (a.c.),Va1 (p.c.),Va2 (a.c.),Va2 (p.c.),Va3 (a.c.),Va3 (p.c.),Va4 (a.c.),Va4 (p.c.),Va5 (a.c.),Va5 (p.c.),Va6 (a.c.),Va6 (p.c.),Vb1 (a.c.),Vb1 (p.c.),Vb2 (a.c.),Vb2 (p.c.),Vb3 (a.c.),Vb3 (p.c.),Vb4 (a.c.),Vb4 (p.c.),Vb5 (a.c.),Vb5 (p.c.),Vb6 (a.c.),Vb6 (p.c.),Vb9 (a.c.),Vb9 (p.c.),Vb10 (a.c.),Vb10 (p.c.,Vb11 (a.c.),Vb11 (p.c.),Vb12 (a.c.),Vb12 (p.c.),Vb13 (a.c.),Vb13 (p.c.),Vb14 (a.c.),Vb14 (p.c.),Vb15 (a.c.),Vb15 (p.c.),Vb17 (a.c.),Vb17 (p.c.),Vb18,Vb19 (a.c.),Vb19 (p.c.),Vb20 (a.c.),Vb20 (p.c.),Vb21 (a.c.),Vb21 (p.c.),Vb23 (a.c.),Vb23 (p.c.),Vb24 (a.c.),Vb24 (p.c.),Vb25 (a.c.),Vb25 (p.c.),Vb26 (a.c.),Vb26 (p.c.),Vb27 (a.c.),Vb27 (p.c.) +,Reference text (Maur),Variant,Type,"Context (Bibl., fixed express., etc)",Not easily corrected,Not easily independently made,Length (impact on text),Total,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +(Titles not yet incorporated),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +1.1,apostolum beatum audiuimus,audiuimus apostolum beatum,INV,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +,,beatum apostolum audiuimus,INV,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +1.2,audiuimus,audimus,GR,,0,0,0,0,,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +3.1,superius,superus,GR,,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +3.2,ubi,cum,LEX,,1,1,1,3,,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +3.3,illos,hos,LEX,BIBL,1,0,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +3.4,quos autem uocauit illos et iustificauit,quos et uocauit hos et uocauit,ADD,BIBL,0,1,2,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +4.1,autem,autem et,ADD,BIBL,0,1,1,2,,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +4.2,et,/,OM,BIBL,0,1,1,2,,0,$,0,$,0,$,0,$,1,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +4.3,glorificauit,glorificabit,GR,BIBL,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +4.4,quid,qui,GR,BIBL,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +4.5,dicemus,dicimus,GR,BIBL,0,0,0,0,,1,$,1,$,0,$,0,$,1,$,1,$,0,$,0,$,1,$,1,$,1,$,0,$,0,$,1,$,0,$,1,$,1,0,1,$,0,$,1,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +5.1,deus pro nobis ut uocaret nos,/,OM,SAUT,1,0,2,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +7.1,uocauit,uocauit nos,ADD,,0,1,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +7.2,auersi,aduersi,SPEL,,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,1,$,0,$,0,$,1,$,1,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +7.3,cum auersi essemus iustificauit,/,OM,SAUT,1,0,2,3,,0,$,0,$,0,$,0,$,1,0,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,T19 alia manu +8.1,glorificauit cum mortales essemus,/,OM,,1,0,2,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$, +8.2,cum_2,cum peccatores,ADD,,1,0,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +9.1,quis,qui,GR,BIBL,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +9.2,praedestinatis,praedestinastis,GR,,0,1,0,1,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +9.3,uocatis iustificatis glorificatis,uocatis a deo iustificatis a deo glorificatis a deo,ADD,,1,1,2,4,,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +10.1,aduersari,auersari,SPEL,,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,1,$,0,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$, +10.2,deum,dominum,LEX,ABBR,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +10.3,audiuimus,audimus,GR,,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,1,0,$,1,$,1,$,1,$,1,$, +11.1,nisi,quidquid est aliud nisi,ADD,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,1,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +,,hoc intelleximus nisi,ADD,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +,,/,OM,,1,0,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +11.2,qui1,quis,GR,,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +11.3,uincit,uicit,GR,,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$, +11.4,laedit nos,nos laedit,INV,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +11.5,non laedit nos,nos non laedit,INV,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,1,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$ +11.6,quis est,/,OM,,1,1,2,4,,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +11.7,qui_2,/,OM,,0,1,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,1,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +11.8,qui uincit omnipotentem,qui uincit omnipotentem qui uincit omnipotentem,REP,,0,1,2,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,1,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +12.1,reluctari,reluctare,GR,,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$ +12.2,nocet,nocebit,GR,,1,0,0,1,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$ +12.3,est,est illud,ADD,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +12.4,quod et,quando,LEX,,1,1,1,3,,1,$,0,$,1,$,0,$,1,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +12.5,quod,quando,LEX,,1,1,1,3,,0,$,1,$,0,$,1,$,0,$,0,$,1,$,1,0,1,$,1,$,1,$,1,$,0,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,0,1,$,1,$,1,0,0,$,0,$,0,$,0,$,0,$ +12.6,adhuc,ante,LEX,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ 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+144.2,uidendo,credendo,LEX,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +144.3,uidendo et tenendo,tenendo et uidendo,INV,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$, +144.4,et,et non,ADD,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +144.5,ergo,non ergo,ADD,,1,1,1,3,,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +144.6,caritas,caritas non ,ADD,,1,1,1,3,,1,$,1,$,1,$,1,$,1,$,1,$,0,$,0,$,0,$,1,$,0,$,1,$,0,$,1,$,0,$,1,$,1,$,1,$,0,$,0,$,0,1,$,0,$,1,$,1,$,0,$,0,$,0,$,0,$,"A0 706, (in Vb12 rasura van 1 woord na caritas)" +,,caritas non non,ADD,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,1,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +,,caritas non tunc,ADD,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +,,caritas non tantum,ADD,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,1,0,$,0,$,1,$,1,$,1,$,1,$, +,,caritas non tunc non,ADD,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,$,1,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +144.7,erit,non deerit,ADD,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +144.8,sicut,sic,LEX,,1,0,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$, +145.1,apostolus ait,ait apostolus,INV,,1,1,1,3,,0,$,0,$,0,$,1,$,0,$,0,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,1,$,0,$,1,$,1,$,1,$,1,$,1,$,1,$, +,,dicit apostolus,LEX,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$, +145.2,horum,horum est,ADD,BIBL,1,0,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,1,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +146.1,securi,sed cum,LEX,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,1,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +146.2,securi illo adiuuante,illo adiuuante securi,INV,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$, +146.3,eo,ea,GR,,0,0,0,0,INTERCHANGEABLE,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$, +146.4,a caritate,/,OM,BIBL,0,1,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$, +147.1,donec,donet,LEX,,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,1,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$, +147.2,donec ipse misereatur,/,OM,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,1,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$ +,,donec misereatur ipse,INV,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,$,1,0,$,0,$,0,$,0,$ +147.3,ipse misereatur,misereatur ipse,INV,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +,,ipse miseratur,GR,,0,1,0,1,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$ +,,misereatur ,OM,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,$,1,0,$,0,$,0,$,0,$,0,$ +147.4,misereatur,ut misereamur,ADD,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,$,1,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +,,mereamur,LEX,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +147.5,ipse perficiat,/,OM,SAUT,1,0,2,3,,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,1,$,$,1,1,$,0,$,1,$,0,$,0,$,0,$,0,0,$,0,$,0,$,1,$,0,$,0,$,1,$,1,$ +,,ipse,OM,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,1,$,1,$,1,$,1,1,$,1,$,1,$,0,$,0,$,0,$,0,$,0,$ +,,ipsa,OM,,1,1,1,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,$,1,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +147.6,tribulatio,eum percipere et tenere uigilanter quo possim cum apostolo constantis si me dicere tribulatio,ADD,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +,,eum percipere et tenere uigilanter quo possim cum apostolo constantis si me dicere maior horum caritas tribulatio (small add. to text in margin),ADD,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,$,1,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +,,quis nos separabit a caritate christi tribulatio (add. above first line page),ADD,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,$,1,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +147.7,an1,/,OM,BIBL,0,1,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$ +147.8,angustia,angustia an persecutio,ADD,BIBL,1,0,2,3,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$ +147.9,an fames,an fames an fames,REP,,0,1,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +147.1,fames,famis,GR,BIBL,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +148.1,te,/,OM,BIBL,0,1,1,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$ +148.2,mortificamur,mortificabimur,GR,BIBL,0,1,0,1,,0,$,1,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,1,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$ +148.3,deputati,disputati,LEX,BIBL,1,1,0,2,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,1,$,1,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +,,dieputati,LEX,BIBL,0,1,0,1,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,$,1,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +,,desputati,LEX,BIBL,0,1,0,1,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,1,0,0,$,0,$,0,$,0,$,0,$ +149.1,ut,sicut,LEX,BIBL,0,1,1,2,,0,$,0,$,0,$,0,$,1,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +149.2,oues,ouis,GR,BIBL,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,1,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,1,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +149.3,quis1,qui,GR,BIBL,0,0,0,0,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ +150.1,ergo si deus pro nobis quis contra nos,/,OM,,1,1,2,4,,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$,1,$,0,$,0,$,0,$,0,$,0,$,0,0,$,0,$,0,$,0,$,0,$,0,$,0,$,0,$ diff --git a/t/graph.t b/t/graph.t new file mode 100644 index 0000000..76e9871 --- /dev/null +++ b/t/graph.t @@ -0,0 +1,150 @@ +#!/usr/bin/perl + +use strict; use warnings; +use Test::More; +use lib 'lib'; +use lemmatizer::Model::Graph; +use XML::LibXML; +use XML::LibXML::XPathContext; + +my $datafile = 't/data/Collatex-16.xml'; + +open( GRAPHFILE, $datafile ) or die "Could not open $datafile"; +my @lines = ; +close GRAPHFILE; +my $graph = lemmatizer::Model::Graph->new( 'xml' => join( '', @lines ) ); + +# Test the svg creation +my $parser = XML::LibXML->new(); +$parser->load_ext_dtd( 0 ); +my $svg = $parser->parse_string( $graph->as_svg() ); +is( $svg->documentElement->nodeName(), 'svg', 'Got an svg document' ); + +# Test for the correct number of nodes in the SVG +my $svg_xpc = XML::LibXML::XPathContext->new( $svg->documentElement() ); +$svg_xpc->registerNs( 'svg', 'http://www.w3.org/2000/svg' ); +my @svg_nodes = $svg_xpc->findnodes( '//svg:g[@class="node"]' ); +is( scalar @svg_nodes, 21, "Correct number of nodes in the graph" ); + +# Test for the correct number of edges +my @svg_edges = $svg_xpc->findnodes( '//svg:g[@class="edge"]' ); +is( scalar @svg_edges, 27, "Correct number of edges in the graph" ); + +# Test for the correct common nodes +my @expected_nodes = map { [ "node_$_", 1 ] } qw/0 1 8 12 13 16 19 20 23 27/; +foreach my $idx ( qw/2 3 5 8 10 13 15/ ) { + splice( @expected_nodes, $idx, 0, [ "node_null", undef ] ); +} +my @active_nodes = $graph->active_nodes(); +# is_deeply( \@active_nodes, \@expected_nodes, "Initial common points" ); +subtest 'Initial common points' => \&compare_active; +my $string = '# when ... ... showers sweet with ... fruit the ... of ... has pierced ... the ... #'; +is( make_text( @active_nodes ), $string, "Got the right starting text" ); + +sub compare_active { + is( scalar( @active_nodes ), scalar ( @expected_nodes ), + "Arrays are same length" ); + + foreach ( 0 .. scalar(@active_nodes)-1 ) { + is( $active_nodes[$_]->[1], $expected_nodes[$_]->[1], + "Element has same toggle value" ); + if( defined $active_nodes[$_]->[1] ) { + is( $active_nodes[$_]->[0], $expected_nodes[$_]->[0], + "Active or toggled element has same node name" ); + } + } +} + +sub make_text { + my @words; + foreach my $n ( @_ ) { + if( $n->[1] ) { + push( @words, $graph->text_of_node( $n->[0] ) ); + } elsif ( !defined $n->[1] ) { + push( @words, '...' ); + } + } + return join( ' ', @words ); +} + +# Test the manuscript paths +my $wit_a = '# when april with his showers sweet with fruit the drought of march has pierced unto the root #'; +my $wit_b = '# when showers sweet with april fruit the march of drought has pierced to the root #'; +my $wit_c = '# when showers sweet with april fruit the drought of march has pierced the rood #'; +is( $graph->text_for_witness( "A" ), $wit_a, "Correct path for witness A" ); +is( $graph->text_for_witness( "B" ), $wit_b, "Correct path for witness B" ); +is( $graph->text_for_witness( "C" ), $wit_c, "Correct path for witness C" ); + +# Test the transposition identifiers +my $transposed_nodes = { 2 => 9, + 9 => 2, + 14 => 18, + 15 => 17, + 17 => 15, + 18 => 14 +}; +is_deeply( $graph->{transpositions}, $transposed_nodes, "Found the right transpositions" ); + +# Test turning on a node +my @off = $graph->toggle_node( 'node_24' ); +$expected_nodes[ 15 ] = [ "node_24", 1 ]; +splice( @expected_nodes, 15, 1, ( [ "node_26", 0 ], [ "node_24", 1 ] ) ); +@active_nodes = $graph->active_nodes( @off ); +subtest 'Turned on node for new location' => \&compare_active; +$string = '# when ... ... showers sweet with ... fruit the ... of ... has pierced ... the root #'; +is( make_text( @active_nodes ), $string, "Got the right text" ); + +# Test the toggling effects of same-column +@off = $graph->toggle_node( 'node_26' ); +splice( @expected_nodes, 15, 2, ( [ "node_24", 0 ], [ "node_26", 1 ] ) ); +@active_nodes = $graph->active_nodes( @off ); +subtest 'Turned on other node in that location' => \&compare_active; +$string = '# when ... ... showers sweet with ... fruit the ... of ... has pierced ... the rood #'; +is( make_text( @active_nodes ), $string, "Got the right text" ); + +# Test the toggling effects of transposition + +@off = $graph->toggle_node( 'node_14' ); +# Add the turned on node +splice( @expected_nodes, 8, 1, ( [ "node_15", 0 ], [ "node_14", 1 ] ) ); +# Add the off transposition node +splice( @expected_nodes, 11, 1, [ "node_18", undef ] ); +# Remove the explicit turning off of the earlier node +splice( @expected_nodes, 16, 1 ); +@active_nodes = $graph->active_nodes( @off ); +subtest 'Turned on transposition node' => \&compare_active; +$string = '# when ... ... showers sweet with ... fruit the drought of ... has pierced ... the rood #'; +is( make_text( @active_nodes ), $string, "Got the right text" ); + +@off = $graph->toggle_node( 'node_18' ); +splice( @expected_nodes, 8, 2, [ "node_14", undef ] ); +splice( @expected_nodes, 10, 1, ( [ "node_17", 0 ], [ "node_18", 1 ] ) ); +@active_nodes = $graph->active_nodes( @off ); +subtest 'Turned on that node\'s partner' => \&compare_active; +$string = '# when ... ... showers sweet with ... fruit the ... of drought has pierced ... the rood #'; +is( make_text( @active_nodes ), $string, "Got the right text" ); + +@off = $graph->toggle_node( 'node_14' ); +splice( @expected_nodes, 8, 1, [ "node_15", 0 ], [ "node_14", 1 ] ); +splice( @expected_nodes, 11, 2, ( [ "node_18", undef ] ) ); +@active_nodes = $graph->active_nodes( @off ); +subtest 'Turned on the original node' => \&compare_active; +$string = '# when ... ... showers sweet with ... fruit the drought of ... has pierced ... the rood #'; +is( make_text( @active_nodes ), $string, "Got the right text" ); + +@off = $graph->toggle_node( 'node_3' ); +splice( @expected_nodes, 3, 1, [ "node_3", 1 ] ); +splice( @expected_nodes, 8, 1 ); +@active_nodes = $graph->active_nodes( @off ); +subtest 'Turned on a singleton node' => \&compare_active; +$string = '# when ... with his showers sweet with ... fruit the drought of ... has pierced ... the rood #'; +is( make_text( @active_nodes ), $string, "Got the right text" ); + +@off = $graph->toggle_node( 'node_3' ); +splice( @expected_nodes, 3, 1, [ "node_3", 0 ] ); +@active_nodes = $graph->active_nodes( @off ); +subtest 'Turned off a singleton node' => \&compare_active; +$string = '# when ... showers sweet with ... fruit the drought of ... has pierced ... the rood #'; +is( make_text( @active_nodes ), $string, "Got the right text" ); + +done_testing();