From: Tara L Andrews <tla@mit.edu>
Date: Sat, 18 Jan 2014 13:43:27 +0000 (+0100)
Subject: remove spurious file
X-Git-Url: http://git.shadowcat.co.uk/gitweb/gitweb.cgi?a=commitdiff_plain;h=696fa5c351be691498d98560ade24a8f1013a86d;p=scpubgit%2Fstemmaweb.git

remove spurious file
---

diff --git a/root/src/phylotrees.tt b/root/src/phylotrees.tt
deleted file mode 100644
index d8628ae..0000000
--- a/root/src/phylotrees.tt
+++ /dev/null
@@ -1,176 +0,0 @@
-[% WRAPPER header.tt
-	pagetitle = "Stemmaweb - Phylogeny calculation tool"
-	applicationjs = c.uri_for( 'js/phylotools.js' )
-%]
-    <script type="text/javascript">
-var basepath = "[% c.uri_for( '/' ) %]";
-var textid = "[% textid %]";
-var editable = "[% editable %]"
-var currSelected;
-var stemmadot = [];
-var stemmasvg = [];
-var stemmata_added = {};
-
-function getPhylogeny () {
-	stemmadot = [];
-	stemmasvg = [];
-	var phylourl = basepath + textid;
-    $('#textinfo_waitbox').show();
-    $.getJSON( basepath + "phylocalc/" + textid, function (textdata) {
-    	stemmadot = textdata.stemmadot;
-    	stemmasvg = textdata.stemmasvg;
-	    $('#textinfo_waitbox').hide();
-	    load_stemma( 0 );
-    }); // TODO error handling
-}
-
-function load_stemma( idx ) {
-	// Load the stemma at idx
-	currSelected = idx;
-	show_stemmapager();
-	if( idx > -1 ) {
-		$('#stemma_graph').empty();
-		$('#stemma_graph').append( stemmasvg[idx] );
-		if( stemmadot[idx].substr('digraph') > -1 && stemmata_added[idx] != true ) {
-			// It has a root, so we may add it to the tradition stemmata.
-			$('#add_stemma_button').show();
-		}
-        setTimeout( 'start_element_height = $("#stemma_graph .node")[0].getBBox().height;', 500 );
-	}
-}
-
-function show_stemmapager () {
-      $('.pager_left_button').unbind('click').addClass( 'greyed_out' );
-      $('.pager_right_button').unbind('click').addClass( 'greyed_out' );
-      if( currSelected > 0 ) {
-              $('.pager_left_button').click( function () {
-                      load_stemma( currSelected - 1 );
-              }).removeClass( 'greyed_out' );
-      }       
-      if( selectedStemmaID + 1 < stemmata.length ) {
-              $('.pager_right_button').click( function () {
-                      load_stemma( currSelected + 1 );
-              }).removeClass( 'greyed_out' );
-      }
-}
-
-function add_selected_stemma () {
-	var requrl = basepath + "stemma/" + textid + "/n";
-	var reqparam = { 'dot': stemmadot[currSelected] };
-	$.post( requrl, reqparam, function (data) {
-		// Disable add for any stemma already added
-		stemmata_added[currSelected] = true;
-		$('#add_stemma_button').hide();
-		// TODO maybe check on the server if the stemma exists?
-	}, 'json' );
-}
-
-function rootStemma ( stemidx, root ) {
-	// Send the stemmadot at stemidx to the server, along with the name of the
-	// selected root node. Receive back a dot spec and an SVG, and enable the
-	var rooturl = basepath + 'microservices/rootedstemma';
-	var params = { 'dot': stemmadot[stemidx], 'root': root };
-	$.post( rooturl, params, function (data) {
-		stemmadot[stemidx] = data.stemmadot;
-		stemmasvg[stemidx] = data.stemmasvg;
-		load_stemma( stemidx );
-	}); // TODO error handling
-}
-
-$(document).ready( function() {
-	$('#stemma_graph').mousedown( function(evt) {
-        evt.stopPropagation();
-        $('#stemma_graph').data( 'mousedown_xy', [evt.clientX, evt.clientY] );
-        $('body').mousemove( function(evt) {
-            mouse_scale = 1; // for now, was:  mouse_scale = svg_root_element.getScreenCTM().a;
-            dx = (evt.clientX - $('#stemma_graph').data( 'mousedown_xy' )[0]) / mouse_scale;
-            dy = (evt.clientY - $('#stemma_graph').data( 'mousedown_xy' )[1]) / mouse_scale;
-            $('#stemma_graph').data( 'mousedown_xy', [evt.clientX, evt.clientY] );
-            var svg_root = $('#stemma_graph svg').svg().svg('get').root();
-            var g = $('g.graph', svg_root).get(0);
-            current_translate = g.getAttribute( 'transform' ).split(/translate\(/)[1].split(')',1)[0].split(' ');
-            new_transform = g.getAttribute( 'transform' ).replace( /translate\([^\)]*\)/, 'translate(' + (parseFloat(current_translate[0]) + dx) + ' ' + (parseFloat(current_translate[1]) + dy) + ')' );
-            g.setAttribute( 'transform', new_transform );
-            evt.returnValue = false;
-            evt.preventDefault();
-            return false;
-        });
-        $('body').mouseup( function(evt) {
-            $('body').unbind('mousemove');
-            $('body').unbind('mouseup');
-        });
-	});
-	 
-	$('#stemma_graph').mousewheel(function (event, delta) {
-        event.returnValue = false;
-        event.preventDefault();
-        if (!delta || delta == null || delta == 0) delta = event.originalEvent.wheelDelta;
-        if (!delta || delta == null || delta == 0) delta = -1 * event.originalEvent.detail;
-        if( delta < -9 ) { delta = -9 }; 
-        var z = 1 + delta/10;
-        z = delta > 0 ? 1 : -1;
-        var svg_root = $('#stemma_graph svg').svg().svg('get').root();
-        var g = $('g.graph', svg_root).get(0);
-        if (g && ((z<1 && (g.getScreenCTM().a * start_element_height) > 4.0) || (z>=1 && (g.getScreenCTM().a * start_element_height) < 1000))) {
-            var scaleLevel = z/10;
-            current_scale = parseFloat( g.getAttribute( 'transform' ).split(/scale\(/)[1].split(')',1)[0].split(' ')[0] );
-            new_transform = g.getAttribute( 'transform' ).replace( /scale\([^\)]*\)/, 'scale(' + (current_scale + scaleLevel) + ')' );
-            g.setAttribute( 'transform', new_transform );
-        }
-    });
-    
-    $('#stemma_root_cancel').hide();
-    if( !editable ) {
-    	$('#stemma_add_form').hide();
-    }
-    // call out to run the phylogeny calculation
-	getPhylogeny();
-	    
-});
-    </script>
-
-[% END %]
-
-    <div id="topbanner">
-      <h1>Stemmaweb - [% algorithm_name %] calculation for [% text_name %]</h1>
-      <span class="mainnav">[% IF c.user_exists %]Hello! [% c.user.get_object.email %] <a class="navlink" href="[% c.uri_for( '/logout' ) %]">Sign out</a> | [% ELSE %]<a class="navlink" onclick="window.open('[% c.uri_for( '/login' ) %]', 'loginwindow', 'height=385,width=445')">Login</a> | [% END %]<a class="navlink" href="[% c.uri_for( 'about.html' ) %]">About</a> </span>
-    </div>
-    <div id="textinfo_container">
-      <div id="textinfo_load_status"></div>
-      <h2>Text <span class="texttitle">[% text_name %]</span></h2>
-      <div id="textinfo_container_buttons">
-          <form id="stemma_pager" action="" method="GET" name="stemma_pager">
-            <div id="stemma_pager_buttons">
-              <div class="pager_left_button" id="stemma_pager_left_button"></div>
-              <div class="pager_right_button" id="stemma_pager_right_button"></div>
-            </div>
-          </form>
-          <form id="stemma_root_form" action="" method="GET" name="start_root_stemma">
-            <div class="button" id="stemma_root_button" 
-            	onClick="TODO">
-          	  <span>Choose a root for this stemma</span>
-            </div>
-          </form>
-          <form id="stemma_root_cancel" action="" method="GET" name="stemma_root_cancel">
-            <div class="button" id="stemma_root_cancel_button" 
-            	onClick="TODO">
-          	  <span>Cancel root selection</span>
-            </div>
-          </form>
-          <form id="stemma_add_form" action="" method="GET" name="stemma_add_form">
-            <div class="button" id="add_stemma_button" 
-            	onClick="add_selected_stemma()">
-          	  <span>Add this stemma to the tradition</span>
-            </div>
-          </form>
-      </div>
-      <div id="stemma_graph"></div>
-    </div>
-
-    <!-- Interim 'loading' message for directory box -->
-    <div id="loading_message">
-    	<h3>Calculating text phylogeny, please wait...</h3>
-    	<img src="[% c.uri_for( 'images', 'ajax-loader.gif' ) %]" alt="Loading tradition list..."/>
-    </div>
-        
-[% PROCESS footer.tt %]
\ No newline at end of file