start documenting and testing
Tara L Andrews [Mon, 3 Oct 2011 15:39:32 +0000 (17:39 +0200)]
META.yml [new file with mode: 0644]
Makefile.PL
lib/Text/Tradition.pm
t/01app.t
t/02pod.t
t/data/florilegium_graphml.xml
t/data/simple.txt [new file with mode: 0644]
t/inline2test.conf [new file with mode: 0644]
t/text_tradition.t [new file with mode: 0644]

diff --git a/META.yml b/META.yml
new file mode 100644 (file)
index 0000000..18a6c3b
--- /dev/null
+++ b/META.yml
@@ -0,0 +1,41 @@
+---
+abstract: ~
+author:
+  - 'Tara L Andrews <aurum@cpan.org>'
+build_requires:
+  ExtUtils::MakeMaker: 6.42
+configure_requires:
+  ExtUtils::MakeMaker: 6.42
+distribution_type: module
+generated_by: 'Module::Install version 0.91'
+license: perl
+meta-spec:
+  url: http://module-build.sourceforge.net/META-spec-v1.4.html
+  version: 1.4
+module_name: Text::Tradition
+name: Text-Tradition
+no_index:
+  directory:
+    - inc
+    - t
+requires:
+  Algorithm::Diff: 0
+  Bio::Phylo::IO: 0
+  File::chdir: 0
+  Graph: 0
+  Graph::Convert: 0
+  Graph::Easy: 0
+  Graph::Reader::Dot: 0
+  IPC::Run: 0
+  Module::Load: 0
+  Moose: 0
+  Moose::Util::TypeConstraints: 0
+  MooseX::NonMoose: 0
+  Text::CSV::Simple: 0
+  Text::CSV_XS: 0
+  XML::LibXML: 0
+  XML::LibXML::XPathContext: 0
+  perl: 5.010
+resources:
+  license: http://dev.perl.org/licenses/
+version: undef
index bf5e1d4..3218b99 100644 (file)
@@ -1,11 +1,10 @@
 #!/usr/bin/env perl
 
-use 5.010;
 use inc::Module::Install;
 author( 'Tara L Andrews <aurum@cpan.org>' );
 license( 'perl' );
-all_from( 'lib/Text/Tradition' );
-requires( 'perl' => '5.010' );
+perl_version( '5.012' );
+all_from( 'lib/Text/Tradition.pm' );
 requires( 'Algorithm::Diff' );
 requires( 'Bio::Phylo::IO' );
 requires( 'File::chdir' );
index 5fa89b7..a978e9e 100644 (file)
@@ -5,6 +5,9 @@ use Moose;
 use Text::Tradition::Collation;
 use Text::Tradition::Witness;
 
+use vars qw( $VERSION );
+$VERSION = "0.1";
+
 has 'collation' => (
     is => 'ro',
     isa => 'Text::Tradition::Collation',
@@ -30,10 +33,141 @@ has 'name' => (
 around 'add_witness' => sub {
     my $orig = shift;
     my $self = shift;
+    # TODO allow add of a Witness object?
     my $new_wit = Text::Tradition::Witness->new( @_ );
     $self->$orig( $new_wit );
     return $new_wit;
 };
+
+=head1 NAME
+
+Text::Tradition - a software model for a set of collated texts
+
+=head1 SYNOPSIS
+
+  use Text::Tradition;
+  my $t = Text::Tradition->new( 
+    'name' => 'this is a text',
+    'input' => 'TEI',
+    'file' => '/path/to/tei_parallel_seg_file.xml' );
+
+  my @text_wits = $t->witnesses();
+  my $manuscript_a = $t->witness( 'A' );
+  my $new_ms = $t->add_witness( 'sigil' => 'B' );
+  
+  my $text_path_svg = $t->collation->as_svg();
+  ## See Text::Tradition::Collation for more on text collation itself
+    
+=head1 DESCRIPTION
+
+Text::Tradition is a library for representation and analysis of collated
+texts, particularly medieval ones.  A 'tradition' refers to the aggregation
+of surviving versions of a text, generally preserved in multiple
+manuscripts (or 'witnesses').  A Tradition object thus has one more more
+Witnesses, as well as a Collation that represents the unity of all versions
+of the text.
+
+=head1 METHODS
+
+=head2 new
+
+Creates and returns a new text tradition object.  The following options are
+accepted.
+
+General options:
+
+=over 4
+
+=item B<name> - The name of the text.
+
+=back
+
+Initialization based on a collation file:
+
+=over 4
+
+=item B<input> - The input format of the collation file.  Can be one of the
+following:
+
+=over 4
+
+=item * Self - a GraphML format produced by this module
+
+=item * CollateX - a GraphML format produced by CollateX
+
+=item * CTE - a TEI XML format produced by Classical Text Editor
+
+=item * KUL - a specific CSV format for variants, not documented here
+
+=item * TEI - a TEI parallel segmentation format file
+
+=item * Tabular - a comma- or tab-separated collation.  Takes an additional
+option, 'sep_char', which defaults to the tab character.
+
+=back
+
+=item B<file> - The name of the file that contains the data.  One of 'file'
+or 'string' should be specified.
+
+=item B<string> - A text string that contains the data.  One of 'file' or
+'string' should be specified.
+
+=item B<base> - The name of a text file that contains the base text, to be
+used with input formats that require it (currently only KUL).
+
+=back
+
+Initialization based on a list of witnesses [NOT YET IMPLEMENTED]:
+
+=over 4
+
+=item B<witnesses> - A reference to an array of Text::Tradition::Witness
+objects that carry the text to be collated.
+
+=item B<collator> - A reference to a collation program that will accept
+Witness objects.
+
+=back
+
+=head2 B<witnesses>
+
+Return the Text::Tradition::Witness objects associated with this tradition,
+as an array.
+
+=head2 B<add_witness>( %opts )
+
+Instantiate a new witness with the given options (see documentation for
+Text::Tradition::Witness) and add it to the tradition.
+
+=begin testing
+
+use_ok( 'Text::Tradition', "can use module" );
+
+my $t = Text::Tradition->new( 'name' => 'empty' );
+is( ref( $t ), 'Text::Tradition', "initialized an empty Tradition object" );
+is( $t->name, 'empty', "object has the right name" );
+is( scalar $t->witnesses, 0, "object has no witnesses" );
+
+my $simple = 't/data/simple.txt';
+my $s = Text::Tradition->new( 
+    'name'  => 'inline', 
+    'input' => 'Tabular',
+    'file'  => $simple,
+    );
+is( ref( $s ), 'Text::Tradition', "initialized a Tradition object" );
+is( $s->name, 'inline', "object has the right name" );
+is( scalar $s->witnesses, 3, "object has three witnesses" );
+
+my $w = $s->add_witness( 'sigil' => 'D' );
+is( ref( $w ), 'Text::Tradition::Witness', "new witness created" );
+is( $w->sigil, 'D', "witness has correct sigil" );
+is( scalar $s->witnesses, 4, "object now has four witnesses" );
+
+# TODO test initialization by witness list when we have it
+
+=end testing
+
+=cut
     
 
 sub BUILD {
@@ -67,13 +201,10 @@ sub BUILD {
         $self->_save_collation( $collation );
 
         # Call the appropriate parser on the given data
-        my @format_standalone = qw/ Self CollateX CSV CTE TEI Tabular /;
+        my @format_standalone = qw/ Self CollateX CTE TEI Tabular /;
         my @format_basetext = qw/ KUL /;
         my $use_base;
         my $format = $init_args->{'input'};
-        unless( $format ) {
-            warn "No data given to create a collation; will initialize an empty one";
-        }
         if( $format && !( grep { $_ eq $format } @format_standalone )
             && !( grep { $_ eq $format } @format_basetext ) ) {
             warn "Unrecognized input format $format; not parsing";
@@ -100,6 +231,32 @@ sub BUILD {
     }
 }
 
+=head2 B<witness>( $sigil )
+
+Returns the Text::Tradition::Witness object whose sigil is $sigil, or undef
+if there is no such object within the tradition.
+
+=begin testing
+
+use Text::Tradition;
+
+my $simple = 't/data/simple.txt';
+my $s = Text::Tradition->new( 
+    'name'  => 'inline', 
+    'input' => 'Tabular',
+    'file'  => $simple,
+    );
+my $wit_a = $s->witness('A');
+is( ref( $wit_a ), 'Text::Tradition::Witness', "Found a witness A" );
+if( $wit_a ) {
+    is( $wit_a->sigil, 'A', "Witness A has the right sigil" );
+}
+is( $s->witness('X'), undef, "There is no witness X" );
+
+=end testing
+
+=cut
+
 sub witness {
     my( $self, $sigil ) = @_;
     my $requested_wit;
@@ -114,24 +271,24 @@ sub witness {
     return $requested_wit;
 }
 
-        
-
-# The user will usually be instantiating a Tradition object, and
-# examining its collation.  The information about the tradition can
-# come via several routes:
-# - graphML from CollateX or elsewhere, standalone
-# - TEI parallel segmentation
-# - Leuven-style spreadsheet of variants, converted to CSV, plus base text
-# - apparatus pulled from CTE, plus base text
-# From this we should be able to get basic witness information.
-# 
-# Alternatively the user can just give us the uncollated texts.  Then
-# instead of passing a collation, s/he is passing a set of witnesses
-# from which we will generate a collation.  Those witnesses can be in
-# plaintext or in TEI with certain constraints adopted.
-
-# So the constructor for a tradition needs to take one of these infosets,
-# and construct the collation and the witness objects.
-
 no Moose;
 __PACKAGE__->meta->make_immutable;
+
+
+=head1 BUGS / TODO
+
+=over
+
+=item * Allow tradition to be initialized via passing to a collator.
+
+=back
+
+=head1 LICENSE
+
+This package is free software and is provided "as is" without express
+or implied warranty.  You can redistribute it and/or modify it under
+the same terms as Perl itself.
+
+=head1 AUTHOR
+
+Tara L Andrews E<lt>aurum@cpan.orgE<gt>
index 9f512b4..f626a2d 100644 (file)
--- a/t/01app.t
+++ b/t/01app.t
@@ -5,10 +5,14 @@ use lib 'lib';
 use Test::More;
 use Text::Tradition;
 
+binmode STDOUT, ":utf8";
+binmode STDERR, ":utf8";
+eval { no warnings; binmode $DB::OUT, ":utf8"; };
+
 BEGIN { use_ok 'Text::Tradition' }
 
 # A simple test, just to make sure we can parse a graph.
-my $datafile = 't/data/florilegium_graphml.xml';
+my $datafile = 't/data/florilegium_tei_ps.xml';
 my $tradition = Text::Tradition->new( 'input' => 'TEI',
                                       'name' => 'test0',
                                       'file' => $datafile,
@@ -19,8 +23,8 @@ is( scalar $tradition->witnesses, 13, "Found all witnesses" );
 ok( $tradition->collation, "Tradition has a collation" );
 
 my $c = $tradition->collation;
-is( scalar $c->readings, 236, "Collation has all readings" );
-is( scalar $c->paths, 1838, "Collation has all paths" );
+is( scalar $c->readings, 319, "Collation has all readings" );
+is( scalar $c->paths, 2854, "Collation has all paths" );
 is( scalar $c->relationships, 0, "Collation has all relationships" );
 
 done_testing;
\ No newline at end of file
index 3d1bab1..32b6d9f 100644 (file)
--- a/t/02pod.t
+++ b/t/02pod.t
@@ -5,6 +5,6 @@ use Test::More;
 
 eval "use Test::Pod 1.14";
 plan skip_all => 'Test::Pod 1.14 required' if $@;
-plan skip_all => 'set TEST_POD to enable this test' unless $ENV{TEST_POD};
+# plan skip_all => 'set TEST_POD to enable this test' unless $ENV{TEST_POD};
 
 all_pod_files_ok();
index 0741c6f..d25df80 100644 (file)
@@ -16,7 +16,7 @@
   <key attr.name="equal_rank" attr.type="boolean" for="edge" id="de4"/>
   <key attr.name="non_correctable" attr.type="boolean" for="edge" id="de5"/>
   <key attr.name="non_independent" attr.type="boolean" for="edge" id="de6"/>
-  <graph edgedefault="directed" id="Tradition" parse.edgeids="canonical" parse.edges="1838" parse.nodeids="canonical" parse.nodes="236" parse.order="nodesfirst">
+  <graph edgedefault="directed" id="Tradition" parse.edgeids="canonical" parse.edges="2854" parse.nodeids="canonical" parse.nodes="319" parse.order="nodesfirst">
     <data key="dg0">, </data>
     <data key="dg1">base text</data>
     <data key="dg2">1</data>
     <node id="n0">
       <data key="dn0">#END#</data>
       <data key="dn1">#END#</data>
-      <data key="dn3">210</data>
+      <data key="dn3">281</data>
       <data key="dn4">meta</data>
     </node>
     <node id="n1">
       <data key="dn0">#LACUNA_a1.42_0#</data>
       <data key="dn1">#LACUNA_a1.42_0#</data>
-      <data key="dn3">75</data>
+      <data key="dn3">101</data>
       <data key="dn4">meta</data>
     </node>
     <node id="n2">
       <data key="dn4">meta</data>
     </node>
     <node id="n4">
-      <data key="dn0">#LACUNA_a3.19_0#</data>
-      <data key="dn1">#LACUNA_a3.19_0#</data>
-      <data key="dn3">130</data>
+      <data key="dn0">#LACUNA_a9.31_0#</data>
+      <data key="dn1">#LACUNA_a9.31_0#</data>
+      <data key="dn3">228</data>
       <data key="dn4">meta</data>
     </node>
     <node id="n5">
-      <data key="dn0">#LACUNA_a3.19_1#</data>
-      <data key="dn1">#LACUNA_a3.19_1#</data>
-      <data key="dn3">130</data>
+      <data key="dn0">#LACUNA_a9.31_1#</data>
+      <data key="dn1">#LACUNA_a9.31_1#</data>
+      <data key="dn3">228</data>
       <data key="dn4">meta</data>
     </node>
     <node id="n6">
-      <data key="dn0">#LACUNA_a3.19_2#</data>
-      <data key="dn1">#LACUNA_a3.19_2#</data>
-      <data key="dn3">130</data>
+      <data key="dn0">#LACUNA_a9.31_2#</data>
+      <data key="dn1">#LACUNA_a9.31_2#</data>
+      <data key="dn3">228</data>
       <data key="dn4">meta</data>
     </node>
     <node id="n7">
-      <data key="dn0">#LACUNA_a3.19_3#</data>
-      <data key="dn1">#LACUNA_a3.19_3#</data>
-      <data key="dn3">130</data>
+      <data key="dn0">#LACUNA_a9.31_3#</data>
+      <data key="dn1">#LACUNA_a9.31_3#</data>
+      <data key="dn3">228</data>
       <data key="dn4">meta</data>
     </node>
     <node id="n8">
-      <data key="dn0">#LACUNA_a3.19_4#</data>
-      <data key="dn1">#LACUNA_a3.19_4#</data>
-      <data key="dn3">130</data>
+      <data key="dn0">#LACUNA_a9.31_4#</data>
+      <data key="dn1">#LACUNA_a9.31_4#</data>
+      <data key="dn3">228</data>
       <data key="dn4">meta</data>
     </node>
     <node id="n9">
-      <data key="dn0">#LACUNA_a3.19_5#</data>
-      <data key="dn1">#LACUNA_a3.19_5#</data>
-      <data key="dn3">130</data>
+      <data key="dn0">#LACUNA_a9.31_5#</data>
+      <data key="dn1">#LACUNA_a9.31_5#</data>
+      <data key="dn3">228</data>
       <data key="dn4">meta</data>
     </node>
     <node id="n10">
-      <data key="dn0">#LACUNA_a3.19_6#</data>
-      <data key="dn1">#LACUNA_a3.19_6#</data>
-      <data key="dn3">130</data>
+      <data key="dn0">#LACUNA_a9.31_6#</data>
+      <data key="dn1">#LACUNA_a9.31_6#</data>
+      <data key="dn3">228</data>
       <data key="dn4">meta</data>
     </node>
     <node id="n11">
+      <data key="dn0">#LACUNA_a9.31_7#</data>
+      <data key="dn1">#LACUNA_a9.31_7#</data>
+      <data key="dn3">228</data>
+      <data key="dn4">meta</data>
+    </node>
+    <node id="n12">
       <data key="dn0">#START#</data>
       <data key="dn1">#START#</data>
       <data key="dn3">0</data>
       <data key="dn4">meta</data>
     </node>
-    <node id="n12">
+    <node id="n13">
       <data key="dn0">w0</data>
       <data key="dn1">Μαξίμου</data>
       <data key="dn3">1</data>
       <data key="dn4">graphml</data>
     </node>
-    <node id="n13">
-      <data key="dn0">w100</data>
-      <data key="dn1">τῆς</data>
-      <data key="dn3">81</data>
-      <data key="dn4">common</data>
-    </node>
     <node id="n14">
-      <data key="dn0">w101</data>
-      <data key="dn1">ἁγίας</data>
-      <data key="dn3">82</data>
-      <data key="dn4">common</data>
+      <data key="dn0">w100</data>
+      <data key="dn1">καταλύσαντι</data>
+      <data key="dn3">87</data>
+      <data key="dn4">graphml</data>
     </node>
     <node id="n15">
-      <data key="dn0">w102</data>
-      <data key="dn1">γραφῆς</data>
-      <data key="dn3">83</data>
-      <data key="dn4">common</data>
-    </node>
-    <node id="n16">
       <data key="dn0">w103</data>
-      <data key="dn1">κατακινούσης</data>
-      <data key="dn3">84</data>
-      <data key="dn4">graphml</data>
-    </node>
-    <node id="n17">
-      <data key="dn0">w104</data>
-      <data key="dn1">κατακρινούσης</data>
-      <data key="dn3">84</data>
+      <data key="dn1">κατακλύσαντι</data>
+      <data key="dn3">87</data>
       <data key="dn4">graphml</data>
     </node>
-    <node id="n18">
+    <node id="n16">
       <data key="dn0">w105</data>
-      <data key="dn1">ἐκείνους,</data>
-      <data key="dn3">85</data>
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       <data key="de0">path</data>
-      <data key="de1">H</data>
+      <data key="de1">D</data>
     </edge>
   </graph>
 </graphml>
diff --git a/t/data/simple.txt b/t/data/simple.txt
new file mode 100644 (file)
index 0000000..8be9717
--- /dev/null
@@ -0,0 +1,23 @@
+A      B       C
+Je     Je      Je
+suis   suis    suis
+dépourvu      dépourvu       depourvu
+de     de      de
+foi    foi     foi
+et     et      et
+ne     ne      ne
+puis   puis    puis
+donc   donc    donc
+être  être   être
+"heureux,"     "heureux,"      "heureux,"
+l'être        le lézard      l'être
+humain         humain
+doit   doit    doit
+mettre mettre  mettre
+des    des     des
+millions       millions        millions
+d'années      d'années       d'années
+pour   pour    pour
+devenir        devenir devenir
+un     un      un
+lézard!       être humain    lézard!
\ No newline at end of file
diff --git a/t/inline2test.conf b/t/inline2test.conf
new file mode 100644 (file)
index 0000000..d365b49
--- /dev/null
@@ -0,0 +1,6 @@
+input=lib
+output=t
+execute=0
+verbose=1
+readonly=1
+header=inline2text.txt
diff --git a/t/text_tradition.t b/t/text_tradition.t
new file mode 100644 (file)
index 0000000..7ddc7e1
--- /dev/null
@@ -0,0 +1,59 @@
+#!/usr/bin/perl -w
+
+use strict;
+use Test::More 'no_plan';
+$| = 1;
+
+
+
+# =begin testing
+{
+use_ok( 'Text::Tradition', "can use module" );
+
+my $t = Text::Tradition->new( 'name' => 'empty' );
+is( ref( $t ), 'Text::Tradition', "initialized an empty Tradition object" );
+is( $t->name, 'empty', "object has the right name" );
+is( scalar $t->witnesses, 0, "object has no witnesses" );
+
+my $simple = 't/data/simple.txt';
+my $s = Text::Tradition->new( 
+    'name'  => 'inline', 
+    'input' => 'Tabular',
+    'file'  => $simple,
+    );
+is( ref( $s ), 'Text::Tradition', "initialized a Tradition object" );
+is( $s->name, 'inline', "object has the right name" );
+is( scalar $s->witnesses, 3, "object has three witnesses" );
+
+my $w = $s->add_witness( 'sigil' => 'D' );
+is( ref( $w ), 'Text::Tradition::Witness', "new witness created" );
+is( $w->sigil, 'D', "witness has correct sigil" );
+is( scalar $s->witnesses, 4, "object now has four witnesses" );
+
+# TODO test initialization by witness list when we have it
+}
+
+
+
+# =begin testing
+{
+use Text::Tradition;
+
+my $simple = 't/data/simple.txt';
+my $s = Text::Tradition->new( 
+    'name'  => 'inline', 
+    'input' => 'Tabular',
+    'file'  => $simple,
+    );
+my $wit_a = $s->witness('A');
+is( ref( $wit_a ), 'Text::Tradition::Witness', "Found a witness A" );
+if( $wit_a ) {
+    is( $wit_a->sigil, 'A', "Witness A has the right sigil" );
+}
+is( $s->witness('X'), undef, "There is no witness X" );
+}
+
+
+
+
+1;