--- /dev/null
+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+ <html xmlns="http://www.w3.org/1999/xhtml">
+<!--
+This file was generated by Devel::NYTProf version 4.06
+-->
+<head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+ <meta http-equiv="Content-Language" content="en-us" />
+ <title>Profile of lib/Text/Tradition/Parser/Self.pm</title>
+<link rel="stylesheet" type="text/css" href="style.css" />
+ <script type="text/javascript" src="js/jquery-min.js"></script>
+
+ <script type="text/javascript" src="js/jquery-tablesorter-min.js"></script>
+ <link rel="stylesheet" type="text/css" href="js/style-tablesorter.css" />
+ <script type="text/javascript">
+ // when a column is first clicked on to sort it, use descending order
+ // XXX doesn't seem to work (and not just because the tablesorter formatSortingOrder() is broken)
+ $.tablesorter.defaults.sortInitialOrder = "desc";
+ // add parser through the tablesorter addParser method
+ $.tablesorter.addParser({
+ id: 'fmt_time', // name of this parser
+ is: function(s) {
+ return false; // return false so this parser is not auto detected
+ },
+ format: function(orig) { // format data for normalization
+ // console.log(orig);
+ val = orig.replace(/ns/,'');
+ if (val != orig) { return val / (1000*1000*1000); }
+ val = orig.replace(/µs/,''); /* XXX use µ ? */
+ if (val != orig) { return val / (1000*1000); }
+ var val = orig.replace(/ms/,'');
+ if (val != orig) { return val / (1000); }
+ var val = orig.replace(/s/,'');
+ if (val != orig) { return val; }
+ if (orig == '0') { return orig; }
+ console.log('no match for fmt_time of '.concat(orig));
+ return orig;
+ },
+ type: 'numeric' // set type, either numeric or text
+ });
+ </script>
+</head>
+
+<body >
+<div class="header" style="position: relative; overflow-x: hidden; overflow-y: hidden; z-index: 0; ">
+<div class="header_back">
+ <a href="index.html">← Index</a>
+ </div>
+<div class="headerForeground" style="float: left">
+ <span class="siteTitle">NYTProf Performance Profile</span>
+ <span class="siteSubtitle">  <span>« <span class="mode_btn"><a href="lib-Text-Tradition-Parser-Self-pm-2520-block.html">block view</a></span> • <span class="mode_btn"><a href="lib-Text-Tradition-Parser-Self-pm-2520-line.html">line view</a></span> • <span class="mode_btn mode_btn_selected">sub view</span> »</span><br />
+ For script/nytprof.pl
+ </span>
+</div>
+<div class="headerForeground" style="float: right; text-align: right">
+ <span class="siteTitle"> </span>
+ <span class="siteSubtitle">Run on Thu May 31 16:49:15 2012<br />Reported on Thu May 31 16:50:52 2012</span>
+</div>
+<div style="position: absolute; left: 0px; top: 0%; width: 100%; height: 101%; z-index: -1; background-color: rgb(17, 136, 255); "></div>
+<div style="position: absolute; left: 0px; top: 2%; width: 100%; height: 99%; z-index: -1; background-color: rgb(16, 134, 253); "></div>
+<div style="position: absolute; left: 0px; top: 4%; width: 100%; height: 97%; z-index: -1; background-color: rgb(16, 133, 252); "></div>
+<div style="position: absolute; left: 0px; top: 6%; width: 100%; height: 95%; z-index: -1; background-color: rgb(15, 131, 250); "></div>
+<div style="position: absolute; left: 0px; top: 8%; width: 100%; height: 93%; z-index: -1; background-color: rgb(15, 130, 249); "></div>
+<div style="position: absolute; left: 0px; top: 10%; width: 100%; height: 91%; z-index: -1; background-color: rgb(15, 129, 248); "></div>
+<div style="position: absolute; left: 0px; top: 12%; width: 100%; height: 89%; z-index: -1; background-color: rgb(14, 127, 246); "></div>
+<div style="position: absolute; left: 0px; top: 14%; width: 100%; height: 87%; z-index: -1; background-color: rgb(14, 126, 245); "></div>
+<div style="position: absolute; left: 0px; top: 16%; width: 100%; height: 85%; z-index: -1; background-color: rgb(14, 125, 244); "></div>
+<div style="position: absolute; left: 0px; top: 18%; width: 100%; height: 83%; z-index: -1; background-color: rgb(13, 123, 242); "></div>
+<div style="position: absolute; left: 0px; top: 20%; width: 100%; height: 81%; z-index: -1; background-color: rgb(13, 122, 241); "></div>
+<div style="position: absolute; left: 0px; top: 22%; width: 100%; height: 79%; z-index: -1; background-color: rgb(13, 121, 240); "></div>
+<div style="position: absolute; left: 0px; top: 24%; width: 100%; height: 77%; z-index: -1; background-color: rgb(12, 119, 238); "></div>
+<div style="position: absolute; left: 0px; top: 26%; width: 100%; height: 75%; z-index: -1; background-color: rgb(12, 118, 237); "></div>
+<div style="position: absolute; left: 0px; top: 28%; width: 100%; height: 73%; z-index: -1; background-color: rgb(12, 116, 235); "></div>
+<div style="position: absolute; left: 0px; top: 30%; width: 100%; height: 71%; z-index: -1; background-color: rgb(11, 115, 234); "></div>
+<div style="position: absolute; left: 0px; top: 32%; width: 100%; height: 69%; z-index: -1; background-color: rgb(11, 114, 233); "></div>
+<div style="position: absolute; left: 0px; top: 34%; width: 100%; height: 67%; z-index: -1; background-color: rgb(11, 112, 231); "></div>
+<div style="position: absolute; left: 0px; top: 36%; width: 100%; height: 65%; z-index: -1; background-color: rgb(10, 111, 230); "></div>
+<div style="position: absolute; left: 0px; top: 38%; width: 100%; height: 63%; z-index: -1; background-color: rgb(10, 110, 229); "></div>
+<div style="position: absolute; left: 0px; top: 40%; width: 100%; height: 61%; z-index: -1; background-color: rgb(10, 108, 227); "></div>
+<div style="position: absolute; left: 0px; top: 42%; width: 100%; height: 59%; z-index: -1; background-color: rgb(9, 107, 226); "></div>
+<div style="position: absolute; left: 0px; top: 44%; width: 100%; height: 57%; z-index: -1; background-color: rgb(9, 106, 225); "></div>
+<div style="position: absolute; left: 0px; top: 46%; width: 100%; height: 55%; z-index: -1; background-color: rgb(9, 104, 223); "></div>
+<div style="position: absolute; left: 0px; top: 48%; width: 100%; height: 53%; z-index: -1; background-color: rgb(8, 103, 222); "></div>
+<div style="position: absolute; left: 0px; top: 50%; width: 100%; height: 51%; z-index: -1; background-color: rgb(8, 102, 221); "></div>
+<div style="position: absolute; left: 0px; top: 52%; width: 100%; height: 49%; z-index: -1; background-color: rgb(8, 100, 219); "></div>
+<div style="position: absolute; left: 0px; top: 54%; width: 100%; height: 47%; z-index: -1; background-color: rgb(7, 99, 218); "></div>
+<div style="position: absolute; left: 0px; top: 56%; width: 100%; height: 45%; z-index: -1; background-color: rgb(7, 97, 216); "></div>
+<div style="position: absolute; left: 0px; top: 58%; width: 100%; height: 43%; z-index: -1; background-color: rgb(7, 96, 215); "></div>
+<div style="position: absolute; left: 0px; top: 60%; width: 100%; height: 41%; z-index: -1; background-color: rgb(6, 95, 214); "></div>
+<div style="position: absolute; left: 0px; top: 62%; width: 100%; height: 39%; z-index: -1; background-color: rgb(6, 93, 212); "></div>
+<div style="position: absolute; left: 0px; top: 64%; width: 100%; height: 37%; z-index: -1; background-color: rgb(6, 92, 211); "></div>
+<div style="position: absolute; left: 0px; top: 66%; width: 100%; height: 35%; z-index: -1; background-color: rgb(5, 91, 210); "></div>
+<div style="position: absolute; left: 0px; top: 68%; width: 100%; height: 33%; z-index: -1; background-color: rgb(5, 89, 208); "></div>
+<div style="position: absolute; left: 0px; top: 70%; width: 100%; height: 31%; z-index: -1; background-color: rgb(5, 88, 207); "></div>
+<div style="position: absolute; left: 0px; top: 72%; width: 100%; height: 29%; z-index: -1; background-color: rgb(4, 87, 206); "></div>
+<div style="position: absolute; left: 0px; top: 74%; width: 100%; height: 27%; z-index: -1; background-color: rgb(4, 85, 204); "></div>
+<div style="position: absolute; left: 0px; top: 76%; width: 100%; height: 25%; z-index: -1; background-color: rgb(4, 84, 203); "></div>
+<div style="position: absolute; left: 0px; top: 78%; width: 100%; height: 23%; z-index: -1; background-color: rgb(3, 82, 201); "></div>
+<div style="position: absolute; left: 0px; top: 80%; width: 100%; height: 21%; z-index: -1; background-color: rgb(3, 81, 200); "></div>
+<div style="position: absolute; left: 0px; top: 82%; width: 100%; height: 19%; z-index: -1; background-color: rgb(3, 80, 199); "></div>
+<div style="position: absolute; left: 0px; top: 84%; width: 100%; height: 17%; z-index: -1; background-color: rgb(2, 78, 197); "></div>
+<div style="position: absolute; left: 0px; top: 86%; width: 100%; height: 15%; z-index: -1; background-color: rgb(2, 77, 196); "></div>
+<div style="position: absolute; left: 0px; top: 88%; width: 100%; height: 13%; z-index: -1; background-color: rgb(2, 76, 195); "></div>
+<div style="position: absolute; left: 0px; top: 90%; width: 100%; height: 11%; z-index: -1; background-color: rgb(1, 74, 193); "></div>
+<div style="position: absolute; left: 0px; top: 92%; width: 100%; height: 9%; z-index: -1; background-color: rgb(1, 73, 192); "></div>
+<div style="position: absolute; left: 0px; top: 94%; width: 100%; height: 7%; z-index: -1; background-color: rgb(1, 72, 191); "></div>
+<div style="position: absolute; left: 0px; top: 96%; width: 100%; height: 5%; z-index: -1; background-color: rgb(0, 70, 189); "></div>
+<div style="position: absolute; left: 0px; top: 98%; width: 100%; height: 3%; z-index: -1; background-color: rgb(0, 69, 188); "></div>
+<div style="position: absolute; left: 0px; top: 100%; width: 100%; height: 1%; z-index: -1; background-color: rgb(0, 68, 187); "></div>
+</div>
+
+<div class="body_content"><br />
+<table class="file_summary"><tr><td class="h">Filename</td><td align="left"><a href="file:///Users/edenc/share/src/stemmatology/stemmaweb/lib/Text/Tradition/Parser/Self.pm">/Users/edenc/share/src/stemmatology/stemmaweb/lib/Text/Tradition/Parser/Self.pm</a></td></tr>
+<tr><td class="h">Statements</td><td align="left">Executed 94057 statements in 100ms</td></tr></table>
+
+ <table id="subs_table" border="1" cellpadding="0" class="tablesorter">
+ <caption>Subroutines</caption>
+ <thead>
+ <tr>
+ <th>Calls</th>
+ <th><span title="Number of Places sub is called from">P</span></th>
+ <th><span title="Number of Files sub is called from">F</span></th>
+ <th>Exclusive<br />Time</th>
+ <th>Inclusive<br />Time</th>
+ <th>Subroutine</th>
+ </tr>
+ </thead>
+ <tbody>
+<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.3%">146ms</span></td><td class="c0"><span title="76.3%">36.7s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Parser::Self::::parse</span>Text::Tradition::Parser::Self::<a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#144">parse</a></span></td></tr>
+<tr><td class="c0">229</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">1.53ms</span></td><td class="c0"><span title="0.0%">1.77ms</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Parser::Self::::_layersort_rel</span>Text::Tradition::Parser::Self::<a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#240">_layersort_rel</a></span></td></tr>
+<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">738µs</span></td><td class="c0"><span title="0.0%">1.10ms</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Parser::Self::::BEGIN@5</span>Text::Tradition::Parser::Self::<a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#5">BEGIN@5</a></span></td></tr>
+<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">437µs</span></td><td class="c0"><span title="0.0%">2.21ms</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Parser::Self::::CORE:sort</span>Text::Tradition::Parser::Self::<a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#Text__Tradition__Parser__Self__CORE_sort">CORE:sort</a> (opcode)</span></td></tr>
+<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">42µs</span></td><td class="c3"><span title="0.0%">46µs</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Parser::Self::::BEGIN@3</span>Text::Tradition::Parser::Self::<a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#3">BEGIN@3</a></span></td></tr>
+<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">12µs</span></td><td class="c3"><span title="0.0%">20µs</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Parser::Self::::BEGIN@4</span>Text::Tradition::Parser::Self::<a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#4">BEGIN@4</a></span></td></tr>
+<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">10µs</span></td><td class="c3"><span title="0.0%">353µs</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Parser::Self::::BEGIN@6</span>Text::Tradition::Parser::Self::<a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#6">BEGIN@6</a></span></td></tr>
+<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">8µs</span></td><td class="c3"><span title="0.0%">54µs</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Parser::Self::::BEGIN@221</span>Text::Tradition::Parser::Self::<a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#221">BEGIN@221</a></span></td></tr>
+<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">8µs</span></td><td class="c3"><span title="0.0%">42µs</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Parser::Self::::BEGIN@223</span>Text::Tradition::Parser::Self::<a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#223">BEGIN@223</a></span></td></tr>
+</tbody></table>
+ Call graph for these subroutines as a
+ <a href="http://en.wikipedia.org/wiki/Graphviz">Graphviz</a>
+ <a href="Users-edenc-share-src-stemmatology-stemmaweb-lib-Text-Tradition-Parser-Self-pm.dot">dot language file</a>.
+
+ <table border="1" cellpadding="0">
+ <thead>
+ <tr><th>Line</th>
+ <th><span title="Number of statements executed">State<br />ments</span></th>
+ <th><span title="Time spend executing statements on the line,
+ excluding time spent executing statements in any called subroutines">Time<br />on line</span></th>
+ <th><span title="Number of subroutines calls">Calls</span></th>
+ <th><span title="Time spent in subroutines called (inclusive)">Time<br />in subs</span></th>
+ <th class="left_indent_header">Code</th>
+ </tr>
+
+ </thead>
+ <tbody>
+ <tr><td class="h"><a name="1"></a>1</td><td></td><td></td><td></td><td></td><td class="s">package Text::Tradition::Parser::Self;</td></tr>
+<tr><td class="h"><a name="2"></a>2</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="3"></a>3</td><td class="c1">2</td><td class="c3"><span title="Avg 15µs">30µs</span></td><td class="c3">2</td><td class="c3">51µs</td><td class="s"><div class="calls"><div class="calls_in"># spent 46µs (42+5) within Text::Tradition::Parser::Self::BEGIN@3 which was called:
+# once (42µs+5µs) by Module::Load::load at <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#3">line 3</a></div></div>use strict;<div class="calls"><div class="calls_out"># spent 46µs making 1 call to <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#3">Text::Tradition::Parser::Self::BEGIN@3</a>
+# spent 5µs making 1 call to <a href="strict-pm-3-sub.html#34">strict::import</a></div></div></td></tr>
+<tr><td class="h"><a name="4"></a>4</td><td class="c1">2</td><td class="c3"><span title="Avg 14µs">29µs</span></td><td class="c3">2</td><td class="c3">28µs</td><td class="s"><div class="calls"><div class="calls_in"># spent 20µs (12+8) within Text::Tradition::Parser::Self::BEGIN@4 which was called:
+# once (12µs+8µs) by Module::Load::load at <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#4">line 4</a></div></div>use warnings;<div class="calls"><div class="calls_out"># spent 20µs making 1 call to <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#4">Text::Tradition::Parser::Self::BEGIN@4</a>
+# spent 8µs making 1 call to <a href="warnings-pm-2-sub.html#386">warnings::import</a></div></div></td></tr>
+<tr><td class="h"><a name="5"></a>5</td><td class="c1">2</td><td class="c2"><span title="Avg 58µs">117µs</span></td><td class="c3">2</td><td class="c0">1.14ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 1.10ms (738µs+364µs) within Text::Tradition::Parser::Self::BEGIN@5 which was called:
+# once (738µs+364µs) by Module::Load::load at <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#5">line 5</a></div></div>use Text::Tradition::Parser::GraphML qw/ graphml_parse /;<div class="calls"><div class="calls_out"># spent 1.10ms making 1 call to <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#5">Text::Tradition::Parser::Self::BEGIN@5</a>
+# spent 41µs making 1 call to <a href="Exporter-pm-8-sub.html#28">Exporter::import</a></div></div></td></tr>
+<tr><td class="h"><a name="6"></a>6</td><td class="c1">2</td><td class="c0"><span title="Avg 242µs">485µs</span></td><td class="c3">2</td><td class="c1">695µs</td><td class="s"><div class="calls"><div class="calls_in"># spent 353µs (10+343) within Text::Tradition::Parser::Self::BEGIN@6 which was called:
+# once (10µs+343µs) by Module::Load::load at <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#6">line 6</a></div></div>use TryCatch;<div class="calls"><div class="calls_out"># spent 353µs making 1 call to <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#6">Text::Tradition::Parser::Self::BEGIN@6</a>
+# spent 343µs making 1 call to <a href="Sub-Exporter-pm-112-sub.html#711">Sub::Exporter::__ANON__[Sub/Exporter.pm:756]</a></div></div></td></tr>
+<tr><td class="h"><a name="7"></a>7</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="8"></a>8</td><td></td><td></td><td></td><td></td><td class="s">=head1 NAME</td></tr>
+<tr><td class="h"><a name="9"></a>9</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="10"></a>10</td><td></td><td></td><td></td><td></td><td class="s">Text::Tradition::Parser::GraphML</td></tr>
+<tr><td class="h"><a name="11"></a>11</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="12"></a>12</td><td></td><td></td><td></td><td></td><td class="s">=head1 SYNOPSIS</td></tr>
+<tr><td class="h"><a name="13"></a>13</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="14"></a>14</td><td></td><td></td><td></td><td></td><td class="s"> use Text::Tradition;</td></tr>
+<tr><td class="h"><a name="15"></a>15</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="16"></a>16</td><td></td><td></td><td></td><td></td><td class="s"> my $t_from_file = Text::Tradition->new( </td></tr>
+<tr><td class="h"><a name="17"></a>17</td><td></td><td></td><td></td><td></td><td class="s"> 'name' => 'my text',</td></tr>
+<tr><td class="h"><a name="18"></a>18</td><td></td><td></td><td></td><td></td><td class="s"> 'input' => 'Self',</td></tr>
+<tr><td class="h"><a name="19"></a>19</td><td></td><td></td><td></td><td></td><td class="s"> 'file' => '/path/to/tradition.xml'</td></tr>
+<tr><td class="h"><a name="20"></a>20</td><td></td><td></td><td></td><td></td><td class="s"> );</td></tr>
+<tr><td class="h"><a name="21"></a>21</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="22"></a>22</td><td></td><td></td><td></td><td></td><td class="s"> my $t_from_string = Text::Tradition->new( </td></tr>
+<tr><td class="h"><a name="23"></a>23</td><td></td><td></td><td></td><td></td><td class="s"> 'name' => 'my text',</td></tr>
+<tr><td class="h"><a name="24"></a>24</td><td></td><td></td><td></td><td></td><td class="s"> 'input' => 'Self',</td></tr>
+<tr><td class="h"><a name="25"></a>25</td><td></td><td></td><td></td><td></td><td class="s"> 'string' => $tradition_xml,</td></tr>
+<tr><td class="h"><a name="26"></a>26</td><td></td><td></td><td></td><td></td><td class="s"> );</td></tr>
+<tr><td class="h"><a name="27"></a>27</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="28"></a>28</td><td></td><td></td><td></td><td></td><td class="s">=head1 DESCRIPTION</td></tr>
+<tr><td class="h"><a name="29"></a>29</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="30"></a>30</td><td></td><td></td><td></td><td></td><td class="s">Parser module for Text::Tradition to read in its own GraphML output format.</td></tr>
+<tr><td class="h"><a name="31"></a>31</td><td></td><td></td><td></td><td></td><td class="s">GraphML is a relatively simple graph description language; a 'graph' element</td></tr>
+<tr><td class="h"><a name="32"></a>32</td><td></td><td></td><td></td><td></td><td class="s">can have 'node' and 'edge' elements, and each of these can have simple 'data'</td></tr>
+<tr><td class="h"><a name="33"></a>33</td><td></td><td></td><td></td><td></td><td class="s">elements for attributes to be saved.</td></tr>
+<tr><td class="h"><a name="34"></a>34</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="35"></a>35</td><td></td><td></td><td></td><td></td><td class="s">The graph itself has attributes as in the Collation object:</td></tr>
+<tr><td class="h"><a name="36"></a>36</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="37"></a>37</td><td></td><td></td><td></td><td></td><td class="s">=over</td></tr>
+<tr><td class="h"><a name="38"></a>38</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="39"></a>39</td><td></td><td></td><td></td><td></td><td class="s">=item * linear </td></tr>
+<tr><td class="h"><a name="40"></a>40</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="41"></a>41</td><td></td><td></td><td></td><td></td><td class="s">=item * ac_label</td></tr>
+<tr><td class="h"><a name="42"></a>42</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="43"></a>43</td><td></td><td></td><td></td><td></td><td class="s">=item * baselabel</td></tr>
+<tr><td class="h"><a name="44"></a>44</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="45"></a>45</td><td></td><td></td><td></td><td></td><td class="s">=item * wit_list_separator</td></tr>
+<tr><td class="h"><a name="46"></a>46</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="47"></a>47</td><td></td><td></td><td></td><td></td><td class="s">=back</td></tr>
+<tr><td class="h"><a name="48"></a>48</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="49"></a>49</td><td></td><td></td><td></td><td></td><td class="s">The node objects have the following attributes:</td></tr>
+<tr><td class="h"><a name="50"></a>50</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="51"></a>51</td><td></td><td></td><td></td><td></td><td class="s">=over</td></tr>
+<tr><td class="h"><a name="52"></a>52</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="53"></a>53</td><td></td><td></td><td></td><td></td><td class="s">=item * name</td></tr>
+<tr><td class="h"><a name="54"></a>54</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="55"></a>55</td><td></td><td></td><td></td><td></td><td class="s">=item * reading</td></tr>
+<tr><td class="h"><a name="56"></a>56</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="57"></a>57</td><td></td><td></td><td></td><td></td><td class="s">=item * identical</td></tr>
+<tr><td class="h"><a name="58"></a>58</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="59"></a>59</td><td></td><td></td><td></td><td></td><td class="s">=item * rank</td></tr>
+<tr><td class="h"><a name="60"></a>60</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="61"></a>61</td><td></td><td></td><td></td><td></td><td class="s">=item * class</td></tr>
+<tr><td class="h"><a name="62"></a>62</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="63"></a>63</td><td></td><td></td><td></td><td></td><td class="s">=back</td></tr>
+<tr><td class="h"><a name="64"></a>64</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="65"></a>65</td><td></td><td></td><td></td><td></td><td class="s">The edge objects have the following attributes:</td></tr>
+<tr><td class="h"><a name="66"></a>66</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="67"></a>67</td><td></td><td></td><td></td><td></td><td class="s">=over</td></tr>
+<tr><td class="h"><a name="68"></a>68</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="69"></a>69</td><td></td><td></td><td></td><td></td><td class="s">=item * class</td></tr>
+<tr><td class="h"><a name="70"></a>70</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="71"></a>71</td><td></td><td></td><td></td><td></td><td class="s">=item * witness (for 'path' class edges)</td></tr>
+<tr><td class="h"><a name="72"></a>72</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="73"></a>73</td><td></td><td></td><td></td><td></td><td class="s">=item * extra (for 'path' class edges)</td></tr>
+<tr><td class="h"><a name="74"></a>74</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="75"></a>75</td><td></td><td></td><td></td><td></td><td class="s">=item * relationship (for 'relationship' class edges)</td></tr>
+<tr><td class="h"><a name="76"></a>76</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="77"></a>77</td><td></td><td></td><td></td><td></td><td class="s">=item * equal_rank (for 'relationship' class edges)</td></tr>
+<tr><td class="h"><a name="78"></a>78</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="79"></a>79</td><td></td><td></td><td></td><td></td><td class="s">=item * non_correctable (for 'relationship' class edges)</td></tr>
+<tr><td class="h"><a name="80"></a>80</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="81"></a>81</td><td></td><td></td><td></td><td></td><td class="s">=item * non_independent (for 'relationship' class edges)</td></tr>
+<tr><td class="h"><a name="82"></a>82</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="83"></a>83</td><td></td><td></td><td></td><td></td><td class="s">=back</td></tr>
+<tr><td class="h"><a name="84"></a>84</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="85"></a>85</td><td></td><td></td><td></td><td></td><td class="s">=head1 METHODS</td></tr>
+<tr><td class="h"><a name="86"></a>86</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="87"></a>87</td><td></td><td></td><td></td><td></td><td class="s">=head2 B<parse></td></tr>
+<tr><td class="h"><a name="88"></a>88</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="89"></a>89</td><td></td><td></td><td></td><td></td><td class="s">parse( $graph, $opts );</td></tr>
+<tr><td class="h"><a name="90"></a>90</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="91"></a>91</td><td></td><td></td><td></td><td></td><td class="s">Takes an initialized Text::Tradition object and a set of options; creates</td></tr>
+<tr><td class="h"><a name="92"></a>92</td><td></td><td></td><td></td><td></td><td class="s">the appropriate nodes and edges on the graph. The options hash should</td></tr>
+<tr><td class="h"><a name="93"></a>93</td><td></td><td></td><td></td><td></td><td class="s">include either a 'file' argument or a 'string' argument, depending on the</td></tr>
+<tr><td class="h"><a name="94"></a>94</td><td></td><td></td><td></td><td></td><td class="s">source of the XML to be parsed.</td></tr>
+<tr><td class="h"><a name="95"></a>95</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="96"></a>96</td><td></td><td></td><td></td><td></td><td class="s">=begin testing</td></tr>
+<tr><td class="h"><a name="97"></a>97</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="98"></a>98</td><td></td><td></td><td></td><td></td><td class="s">use Text::Tradition;</td></tr>
+<tr><td class="h"><a name="99"></a>99</td><td></td><td></td><td></td><td></td><td class="s">binmode STDOUT, ":utf8";</td></tr>
+<tr><td class="h"><a name="100"></a>100</td><td></td><td></td><td></td><td></td><td class="s">binmode STDERR, ":utf8";</td></tr>
+<tr><td class="h"><a name="101"></a>101</td><td></td><td></td><td></td><td></td><td class="s">eval { no warnings; binmode $DB::OUT, ":utf8"; };</td></tr>
+<tr><td class="h"><a name="102"></a>102</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="103"></a>103</td><td></td><td></td><td></td><td></td><td class="s">my $tradition = 't/data/florilegium_graphml.xml';</td></tr>
+<tr><td class="h"><a name="104"></a>104</td><td></td><td></td><td></td><td></td><td class="s">my $t = Text::Tradition->new( </td></tr>
+<tr><td class="h"><a name="105"></a>105</td><td></td><td></td><td></td><td></td><td class="s"> 'name' => 'inline', </td></tr>
+<tr><td class="h"><a name="106"></a>106</td><td></td><td></td><td></td><td></td><td class="s"> 'input' => 'Self',</td></tr>
+<tr><td class="h"><a name="107"></a>107</td><td></td><td></td><td></td><td></td><td class="s"> 'file' => $tradition,</td></tr>
+<tr><td class="h"><a name="108"></a>108</td><td></td><td></td><td></td><td></td><td class="s"> );</td></tr>
+<tr><td class="h"><a name="109"></a>109</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="110"></a>110</td><td></td><td></td><td></td><td></td><td class="s">is( ref( $t ), 'Text::Tradition', "Parsed GraphML version 2" );</td></tr>
+<tr><td class="h"><a name="111"></a>111</td><td></td><td></td><td></td><td></td><td class="s">if( $t ) {</td></tr>
+<tr><td class="h"><a name="112"></a>112</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $t->collation->readings, 319, "Collation has all readings" );</td></tr>
+<tr><td class="h"><a name="113"></a>113</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $t->collation->paths, 376, "Collation has all paths" );</td></tr>
+<tr><td class="h"><a name="114"></a>114</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $t->witnesses, 13, "Collation has all witnesses" );</td></tr>
+<tr><td class="h"><a name="115"></a>115</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
+<tr><td class="h"><a name="116"></a>116</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="117"></a>117</td><td></td><td></td><td></td><td></td><td class="s"># TODO add a relationship, write graphml, reparse it, check that the rel</td></tr>
+<tr><td class="h"><a name="118"></a>118</td><td></td><td></td><td></td><td></td><td class="s"># is still there</td></tr>
+<tr><td class="h"><a name="119"></a>119</td><td></td><td></td><td></td><td></td><td class="s">$t->language('Greek');</td></tr>
+<tr><td class="h"><a name="120"></a>120</td><td></td><td></td><td></td><td></td><td class="s">$t->collation->add_relationship( 'w12', 'w13', </td></tr>
+<tr><td class="h"><a name="121"></a>121</td><td></td><td></td><td></td><td></td><td class="s"> { 'type' => 'grammatical', 'scope' => 'global', </td></tr>
+<tr><td class="h"><a name="122"></a>122</td><td></td><td></td><td></td><td></td><td class="s"> 'annotation' => 'This is some note' } );</td></tr>
+<tr><td class="h"><a name="123"></a>123</td><td></td><td></td><td></td><td></td><td class="s">ok( $t->collation->get_relationship( 'w12', 'w13' ), "Relationship set" );</td></tr>
+<tr><td class="h"><a name="124"></a>124</td><td></td><td></td><td></td><td></td><td class="s">my $graphml_str = $t->collation->as_graphml;</td></tr>
+<tr><td class="h"><a name="125"></a>125</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="126"></a>126</td><td></td><td></td><td></td><td></td><td class="s">my $newt = Text::Tradition->new( 'input' => 'Self', 'string' => $graphml_str );</td></tr>
+<tr><td class="h"><a name="127"></a>127</td><td></td><td></td><td></td><td></td><td class="s">is( ref( $newt ), 'Text::Tradition', "Parsed current GraphML version" );</td></tr>
+<tr><td class="h"><a name="128"></a>128</td><td></td><td></td><td></td><td></td><td class="s">if( $newt ) {</td></tr>
+<tr><td class="h"><a name="129"></a>129</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $newt->collation->readings, 319, "Collation has all readings" );</td></tr>
+<tr><td class="h"><a name="130"></a>130</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $newt->collation->paths, 376, "Collation has all paths" );</td></tr>
+<tr><td class="h"><a name="131"></a>131</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $newt->witnesses, 13, "Collation has all witnesses" );</td></tr>
+<tr><td class="h"><a name="132"></a>132</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $newt->collation->relationships, 1, "Collation has added relationship" );</td></tr>
+<tr><td class="h"><a name="133"></a>133</td><td></td><td></td><td></td><td></td><td class="s"> is( $newt->language, 'Greek', "Tradition has correct language setting" );</td></tr>
+<tr><td class="h"><a name="134"></a>134</td><td></td><td></td><td></td><td></td><td class="s"> my $rel = $newt->collation->get_relationship( 'w12', 'w13' );</td></tr>
+<tr><td class="h"><a name="135"></a>135</td><td></td><td></td><td></td><td></td><td class="s"> ok( $rel, "Found set relationship" );</td></tr>
+<tr><td class="h"><a name="136"></a>136</td><td></td><td></td><td></td><td></td><td class="s"> is( $rel->annotation, 'This is some note', "Relationship has its properties" );</td></tr>
+<tr><td class="h"><a name="137"></a>137</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
+<tr><td class="h"><a name="138"></a>138</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="139"></a>139</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="140"></a>140</td><td></td><td></td><td></td><td></td><td class="s">=end testing</td></tr>
+<tr><td class="h"><a name="141"></a>141</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="142"></a>142</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
+<tr><td class="h"><a name="143"></a>143</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="144"></a>144</td><td></td><td></td><td></td><td></td><td class="s"><div class="calls"><div class="calls_in"># spent 36.7s (146ms+36.6) within Text::Tradition::Parser::Self::parse which was called:
+# once (146ms+36.6s) by Text::Tradition::BUILD at <a href="lib-Text-Tradition-pm-673-sub.html#288">line 288 of lib/Text/Tradition.pm</a></div></div>sub parse {</td></tr>
+<tr><td class="h"><a name="145"></a>145</td><td class="c0">92900</td><td class="c0"><span title="Avg 1µs">97.3ms</span></td><td></td><td></td><td class="s"> my( $tradition, $opts ) = @_;</td></tr>
+<tr><td class="h"><a name="146"></a>146</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="147"></a>147</td><td></td><td></td><td></td><td></td><td class="s"> # Collation data is in the first graph; relationship-specific stuff </td></tr>
+<tr><td class="h"><a name="148"></a>148</td><td></td><td></td><td></td><td></td><td class="s"> # is in the second.</td></tr>
+<tr><td class="h"><a name="149"></a>149</td><td></td><td></td><td class="c3">2</td><td class="c0">11.2s</td><td class="s"> my( $graph_data, $rel_data ) = graphml_parse( $opts );<div class="calls"><div class="calls_out"> # spent 11.2s making 1 call to <a href="lib-Text-Tradition-Parser-GraphML-pm-2521-sub.html#40">Text::Tradition::Parser::GraphML::graphml_parse</a>
+ # spent 2µs making 1 call to <a href="XML-LibXML-pm-1093-sub.html#XML__LibXML__Node__DESTROY">XML::LibXML::Node::DESTROY</a></div></div></td></tr>
+<tr><td class="h"><a name="150"></a>150</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="151"></a>151</td><td></td><td></td><td class="c3">1</td><td class="c3">5µs</td><td class="s"> my $collation = $tradition->collation;<div class="calls"><div class="calls_out"> # spent 5µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::collation</a></div></div></td></tr>
+<tr><td class="h"><a name="152"></a>152</td><td></td><td></td><td></td><td></td><td class="s"> my %witnesses;</td></tr>
+<tr><td class="h"><a name="153"></a>153</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="154"></a>154</td><td></td><td></td><td></td><td></td><td class="s"> # print STDERR "Setting graph globals\n";</td></tr>
+<tr><td class="h"><a name="155"></a>155</td><td></td><td></td><td class="c3">1</td><td class="c3">8µs</td><td class="s"> $tradition->name( $graph_data->{'name'} );<div class="calls"><div class="calls_out"> # spent 8µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::name</a></div></div></td></tr>
+<tr><td class="h"><a name="156"></a>156</td><td></td><td></td><td></td><td></td><td class="s"> my $use_version;</td></tr>
+<tr><td class="h"><a name="157"></a>157</td><td></td><td></td><td class="c3">1</td><td class="c3">29µs</td><td class="s"> my $tmeta = $tradition->meta;<div class="calls"><div class="calls_out"> # spent 29µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::meta</a></div></div></td></tr>
+<tr><td class="h"><a name="158"></a>158</td><td></td><td></td><td class="c3">1</td><td class="c3">15µs</td><td class="s"> my $cmeta = $collation->meta;<div class="calls"><div class="calls_out"> # spent 15µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::meta</a></div></div></td></tr>
+<tr><td class="h"><a name="159"></a>159</td><td></td><td></td><td></td><td></td><td class="s"> foreach my $gkey ( keys %{$graph_data->{'global'}} ) {</td></tr>
+<tr><td class="h"><a name="160"></a>160</td><td></td><td></td><td></td><td></td><td class="s"> my $val = $graph_data->{'global'}->{$gkey};</td></tr>
+<tr><td class="h"><a name="161"></a>161</td><td></td><td></td><td class="c3">4</td><td class="c3">24µs</td><td class="s"> if( $gkey eq 'version' ) {<div class="calls"><div class="calls_out"> # spent 24µs making 4 calls to <a href="Class-MOP-Mixin-HasAttributes-pm-89-sub.html#50">Class::MOP::Mixin::HasAttributes::has_attribute</a>, avg 6µs/call</div></div></td></tr>
+<tr><td class="h"><a name="162"></a>162</td><td></td><td></td><td></td><td></td><td class="s"> $use_version = $val;</td></tr>
+<tr><td class="h"><a name="163"></a>163</td><td></td><td></td><td></td><td></td><td class="s"> } elsif( $tmeta->has_attribute( $gkey ) ) {</td></tr>
+<tr><td class="h"><a name="164"></a>164</td><td></td><td></td><td></td><td></td><td class="s"> $tradition->$gkey( $val );</td></tr>
+<tr><td class="h"><a name="165"></a>165</td><td></td><td></td><td></td><td></td><td class="s"> } else {</td></tr>
+<tr><td class="h"><a name="166"></a>166</td><td></td><td></td><td class="c3">4</td><td class="c3">24µs</td><td class="s"> $collation->$gkey( $val );<div class="calls"><div class="calls_out"> # spent 7µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::wit_list_separator</a>
+ # spent 6µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::linear</a>
+ # spent 6µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::ac_label</a>
+ # spent 5µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::baselabel</a></div></div></td></tr>
+<tr><td class="h"><a name="167"></a>167</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
+<tr><td class="h"><a name="168"></a>168</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
+<tr><td class="h"><a name="169"></a>169</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="170"></a>170</td><td></td><td></td><td></td><td></td><td class="s"> # Add the nodes to the graph. </td></tr>
+<tr><td class="h"><a name="171"></a>171</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="172"></a>172</td><td></td><td></td><td></td><td></td><td class="s"> # print STDERR "Adding collation readings\n";</td></tr>
+<tr><td class="h"><a name="173"></a>173</td><td></td><td></td><td></td><td></td><td class="s"> foreach my $n ( @{$graph_data->{'nodes'}} ) { </td></tr>
+<tr><td class="h"><a name="174"></a>174</td><td></td><td></td><td></td><td></td><td class="s"> # If it is the start or end node, we already have one, so</td></tr>
+<tr><td class="h"><a name="175"></a>175</td><td></td><td></td><td></td><td></td><td class="s"> # grab the rank and go.</td></tr>
+<tr><td class="h"><a name="176"></a>176</td><td></td><td></td><td></td><td></td><td class="s"> next if( defined $n->{'is_start'} );</td></tr>
+<tr><td class="h"><a name="177"></a>177</td><td></td><td></td><td></td><td></td><td class="s"> if( defined $n->{'is_end'} ) {</td></tr>
+<tr><td class="h"><a name="178"></a>178</td><td></td><td></td><td class="c3">2</td><td class="c3">26µs</td><td class="s"> $collation->end->rank( $n->{'rank'} );<div class="calls"><div class="calls_out"> # spent 22µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::Reading::rank</a>
+ # spent 4µs making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::end</a></div></div></td></tr>
+<tr><td class="h"><a name="179"></a>179</td><td></td><td></td><td></td><td></td><td class="s"> next;</td></tr>
+<tr><td class="h"><a name="180"></a>180</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
+<tr><td class="h"><a name="181"></a>181</td><td></td><td></td><td class="c0">1093</td><td class="c0">355ms</td><td class="s"> my $gnode = $collation->add_reading( $n );<div class="calls"><div class="calls_out"> # spent 355ms making 1093 calls to <a href="lib-Text-Tradition-Collation-pm-686-sub.html#283">Text::Tradition::Collation::add_reading</a>, avg 325µs/call</div></div></td></tr>
+<tr><td class="h"><a name="182"></a>182</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
+<tr><td class="h"><a name="183"></a>183</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="184"></a>184</td><td></td><td></td><td></td><td></td><td class="s"> # Now add the edges.</td></tr>
+<tr><td class="h"><a name="185"></a>185</td><td></td><td></td><td></td><td></td><td class="s"> # print STDERR "Adding collation path edges\n";</td></tr>
+<tr><td class="h"><a name="186"></a>186</td><td></td><td></td><td></td><td></td><td class="s"> foreach my $e ( @{$graph_data->{'edges'}} ) {</td></tr>
+<tr><td class="h"><a name="187"></a>187</td><td></td><td></td><td class="c0">12605</td><td class="c0">49.5ms</td><td class="s"> my $from = $collation->reading( $e->{'source'}->{'id'} );<div class="calls"><div class="calls_out"> # spent 49.5ms making 12605 calls to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::reading</a>, avg 4µs/call</div></div></td></tr>
+<tr><td class="h"><a name="188"></a>188</td><td></td><td></td><td class="c0">12605</td><td class="c0">42.3ms</td><td class="s"> my $to = $collation->reading( $e->{'target'}->{'id'} );<div class="calls"><div class="calls_out"> # spent 42.3ms making 12605 calls to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::reading</a>, avg 3µs/call</div></div></td></tr>
+<tr><td class="h"><a name="189"></a>189</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="190"></a>190</td><td></td><td></td><td></td><td></td><td class="s"> warn "No witness label on path edge!" unless $e->{'witness'};</td></tr>
+<tr><td class="h"><a name="191"></a>191</td><td></td><td></td><td></td><td></td><td class="s"> my $label = $e->{'witness'} . ( $e->{'extra'} ? $collation->ac_label : '' );</td></tr>
+<tr><td class="h"><a name="192"></a>192</td><td></td><td></td><td class="c0">12605</td><td class="c0">1.22s</td><td class="s"> $collation->add_path( $from, $to, $label );<div class="calls"><div class="calls_out"> # spent 1.22s making 12605 calls to <a href="lib-Text-Tradition-Collation-pm-686-sub.html#425">Text::Tradition::Collation::add_path</a>, avg 97µs/call</div></div></td></tr>
+<tr><td class="h"><a name="193"></a>193</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="194"></a>194</td><td></td><td></td><td></td><td></td><td class="s"> # Add the witness if we don't have it already.</td></tr>
+<tr><td class="h"><a name="195"></a>195</td><td></td><td></td><td></td><td></td><td class="s"> unless( $witnesses{$e->{'witness'}} ) {</td></tr>
+<tr><td class="h"><a name="196"></a>196</td><td></td><td></td><td class="c0">13</td><td class="c0">2.30ms</td><td class="s"> $tradition->add_witness( <div class="calls"><div class="calls_out"> # spent 2.30ms making 13 calls to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::add_witness</a>, avg 177µs/call</div></div></td></tr>
+<tr><td class="h"><a name="197"></a>197</td><td></td><td></td><td></td><td></td><td class="s"> sigil => $e->{'witness'}, 'sourcetype' => 'collation' );</td></tr>
+<tr><td class="h"><a name="198"></a>198</td><td></td><td></td><td></td><td></td><td class="s"> $witnesses{$e->{'witness'}} = 1;</td></tr>
+<tr><td class="h"><a name="199"></a>199</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
+<tr><td class="h"><a name="200"></a>200</td><td></td><td></td><td></td><td></td><td class="s"> $tradition->witness( $e->{'witness'} )->is_layered( 1 ) if $e->{'extra'};</td></tr>
+<tr><td class="h"><a name="201"></a>201</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
+<tr><td class="h"><a name="202"></a>202</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="203"></a>203</td><td></td><td></td><td></td><td></td><td class="s"> ## Done with the main graph, now look at the relationships.</td></tr>
+<tr><td class="h"><a name="204"></a>204</td><td></td><td></td><td></td><td></td><td class="s"> # Nodes are added via the call to add_reading above. We only need</td></tr>
+<tr><td class="h"><a name="205"></a>205</td><td></td><td></td><td></td><td></td><td class="s"> # add the relationships themselves.</td></tr>
+<tr><td class="h"><a name="206"></a>206</td><td></td><td></td><td></td><td></td><td class="s"> # TODO check that scoping does trt</td></tr>
+<tr><td class="h"><a name="207"></a>207</td><td></td><td></td><td></td><td></td><td class="s"> $rel_data->{'edges'} ||= []; # so that the next line doesn't break on no rels</td></tr>
+<tr><td class="h"><a name="208"></a>208</td><td class="c3">1</td><td class="c3"><span title="Avg 65µs">65µs</span></td><td class="c0">230</td><td class="c0">3.99ms</td><td class="s"> foreach my $e ( sort { _layersort_rel( $a, $b ) } @{$rel_data->{'edges'}} ) {<div class="calls"><div class="calls_out"> # spent 2.21ms making 1 call to <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#Text__Tradition__Parser__Self__CORE_sort">Text::Tradition::Parser::Self::CORE:sort</a>
+ # spent 1.77ms making 229 calls to <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#240">Text::Tradition::Parser::Self::_layersort_rel</a>, avg 8µs/call</div></div></td></tr>
+<tr><td class="h"><a name="209"></a>209</td><td></td><td></td><td class="c0">58</td><td class="c2">452µs</td><td class="s"> my $from = $collation->reading( $e->{'source'}->{'id'} );<div class="calls"><div class="calls_out"> # spent 452µs making 58 calls to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::reading</a>, avg 8µs/call</div></div></td></tr>
+<tr><td class="h"><a name="210"></a>210</td><td></td><td></td><td class="c0">58</td><td class="c3">244µs</td><td class="s"> my $to = $collation->reading( $e->{'target'}->{'id'} );<div class="calls"><div class="calls_out"> # spent 244µs making 58 calls to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::reading</a>, avg 4µs/call</div></div></td></tr>
+<tr><td class="h"><a name="211"></a>211</td><td></td><td></td><td></td><td></td><td class="s"> delete $e->{'source'};</td></tr>
+<tr><td class="h"><a name="212"></a>212</td><td></td><td></td><td></td><td></td><td class="s"> delete $e->{'target'};</td></tr>
+<tr><td class="h"><a name="213"></a>213</td><td></td><td></td><td></td><td></td><td class="s"> # The remaining keys are relationship attributes.</td></tr>
+<tr><td class="h"><a name="214"></a>214</td><td></td><td></td><td></td><td></td><td class="s"> # Backward compatibility...</td></tr>
+<tr><td class="h"><a name="215"></a>215</td><td></td><td></td><td></td><td></td><td class="s"> if( $use_version eq '2.0' || $use_version eq '3.0' ) {</td></tr>
+<tr><td class="h"><a name="216"></a>216</td><td></td><td></td><td></td><td></td><td class="s"> delete $e->{'class'};</td></tr>
+<tr><td class="h"><a name="217"></a>217</td><td></td><td></td><td></td><td></td><td class="s"> $e->{'type'} = delete $e->{'relationship'} if exists $e->{'relationship'};</td></tr>
+<tr><td class="h"><a name="218"></a>218</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
+<tr><td class="h"><a name="219"></a>219</td><td></td><td></td><td></td><td></td><td class="s"> # Add the specified relationship unless we already have done.</td></tr>
+<tr><td class="h"><a name="220"></a>220</td><td></td><td></td><td></td><td></td><td class="s"> my $rel_exists;</td></tr>
+<tr><td class="h"><a name="221"></a>221</td><td class="c3">1</td><td class="c3"><span title="Avg 73µs">73µs</span></td><td class="c0">61</td><td class="c3">287µs</td><td class="s"><div class="calls"><div class="calls_in"># spent 54µs (8+46) within Text::Tradition::Parser::Self::BEGIN@221 which was called:
+# once (8µs+46µs) by Module::Load::load at <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#221">line 221</a></div></div> if( $e->{'scope'} ne 'local' ) {<div class="calls"><div class="calls_out"> # spent 168µs making 58 calls to <a href="TryCatch-pm-905-sub.html#87">TryCatch::__ANON__[TryCatch.pm:87]</a>, avg 3µs/call
+ # spent 54µs making 1 call to <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#221">Text::Tradition::Parser::Self::BEGIN@221</a>
+ # spent 46µs making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a>
+ # spent 20µs making 1 call to <a href="Devel-Declare-pm-906-sub.html#108">Devel::Declare::done_declare</a></div></div></td></tr>
+<tr><td class="h"><a name="222"></a>222</td><td></td><td></td><td class="c0">107</td><td class="c0">18.9s</td><td class="s"> $collation->add_relationship( $from, $to, $e ) unless $rel_exists;<div class="calls"><div class="calls_out"> # spent 18.9s making 51 calls to <a href="lib-Text-Tradition-Collation-pm-686-sub.html#502">Text::Tradition::Collation::add_relationship</a>, avg 370ms/call
+ # spent 8.26ms making 56 calls to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::get_relationship</a>, avg 148µs/call</div></div></td></tr>
+<tr><td class="h"><a name="223"></a>223</td><td class="c3">1</td><td class="c2"><span title="Avg 115µs">115µs</span></td><td class="c0">17</td><td class="c0">13.7ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 42µs (8+34) within Text::Tradition::Parser::Self::BEGIN@223 which was called:
+# once (8µs+34µs) by Module::Load::load at <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#223">line 223</a></div></div> } catch( Text::Tradition::Error $e ) {<div class="calls"><div class="calls_out"> # spent 13.6ms making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a>
+ # spent 42µs making 1 call to <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#223">Text::Tradition::Parser::Self::BEGIN@223</a>
+ # spent 34µs making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a>
+ # spent 28µs making 7 calls to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::Relationship::scope</a>, avg 4µs/call
+ # spent 22µs making 7 calls to <a href="Class-MOP-Package-pm-122-sub.html#221">Text::Tradition::Collation::Relationship::type</a>, avg 3µs/call</div></div></td></tr>
+<tr><td class="h"><a name="224"></a>224</td><td></td><td></td><td></td><td></td><td class="s"> warn "DROPPING $from -> $to: " . $e->message;</td></tr>
+<tr><td class="h"><a name="225"></a>225</td><td></td><td></td><td class="c3">1</td><td class="c3">80µs</td><td class="s"> }<div class="calls"><div class="calls_out"> # spent 80µs making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a></div></div></td></tr>
+<tr><td class="h"><a name="226"></a>226</td><td class="c3">1</td><td class="c0"><span title="Avg 238µs">238µs</span></td><td></td><td></td><td class="s"> }</td></tr>
+<tr><td class="h"><a name="227"></a>227</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
+<tr><td class="h"><a name="228"></a>228</td><td class="c3">1</td><td class="c3"><span title="Avg 3µs">3µs</span></td><td class="c3">1</td><td class="c3">216µs</td><td class="s"> # Save the text for each witness so that we can ensure consistency<div class="calls"><div class="calls_out"> # spent 216µs making 1 call to <a href="Devel-Declare-pm-906-sub.html#271">Devel::Declare::linestr_callback</a></div></div></td></tr>
+<tr><td class="h"><a name="229"></a>229</td><td></td><td></td><td></td><td></td><td class="s"> # later on</td></tr>
+<tr><td class="h"><a name="230"></a>230</td><td></td><td></td><td class="c3">1</td><td class="c0">4.83s</td><td class="s"> $collation->text_from_paths(); <div class="calls"><div class="calls_out"> # spent 4.83s making 1 call to <a href="lib-Text-Tradition-Collation-pm-686-sub.html#1675">Text::Tradition::Collation::text_from_paths</a></div></div></td></tr>
+<tr><td class="h"><a name="231"></a>231</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
+<tr><td class="h"><a name="232"></a>232</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="233"></a>233</td><td></td><td></td><td></td><td></td><td class="s">## Return the relationship that comes first in priority.</td></tr>
+<tr><td class="h"><a name="234"></a>234</td><td class="c3">1</td><td class="c3"><span title="Avg 2µs">2µs</span></td><td></td><td></td><td class="s">my %LAYERS = (</td></tr>
+<tr><td class="h"><a name="235"></a>235</td><td></td><td></td><td></td><td></td><td class="s"> 'collated' => 1,</td></tr>
+<tr><td class="h"><a name="236"></a>236</td><td></td><td></td><td></td><td></td><td class="s"> 'orthographic' => 2,</td></tr>
+<tr><td class="h"><a name="237"></a>237</td><td></td><td></td><td></td><td></td><td class="s"> 'spelling' => 3,</td></tr>
+<tr><td class="h"><a name="238"></a>238</td><td></td><td></td><td></td><td></td><td class="s"> );</td></tr>
+<tr><td class="h"><a name="239"></a>239</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="240"></a>240</td><td></td><td></td><td></td><td></td><td class="s"><div class="calls"><div class="calls_in"># spent 1.77ms (1.53+249µs) within Text::Tradition::Parser::Self::_layersort_rel which was called 229 times, avg 8µs/call:
+# 229 times (1.53ms+249µs) by Text::Tradition::Parser::Self::CORE:sort at <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#208">line 208</a>, avg 8µs/call</div></div>sub _layersort_rel {</td></tr>
+<tr><td class="h"><a name="241"></a>241</td><td class="c0">1145</td><td class="c0"><span title="Avg 2µs">1.81ms</span></td><td></td><td></td><td class="s"> my( $a, $b ) = @_;</td></tr>
+<tr><td class="h"><a name="242"></a>242</td><td></td><td></td><td></td><td></td><td class="s"> my $key = exists $a->{'type'} ? 'type' : 'relationship';</td></tr>
+<tr><td class="h"><a name="243"></a>243</td><td></td><td></td><td></td><td></td><td class="s"> my $at = $LAYERS{$a->{$key}} || 99;</td></tr>
+<tr><td class="h"><a name="244"></a>244</td><td></td><td></td><td></td><td></td><td class="s"> my $bt = $LAYERS{$b->{$key}} || 99;</td></tr>
+<tr><td class="h"><a name="245"></a>245</td><td></td><td></td><td class="c0">458</td><td class="c3">249µs</td><td class="s"> return $at <=> $bt;<div class="calls"><div class="calls_out"> # spent 131µs making 229 calls to <a href="script-nytprof-pl-1-sub.html#Scope__Upper__unwind">Scope::Upper::unwind</a>, avg 572ns/call
+ # spent 118µs making 229 calls to <a href="Scope-Upper-pm-1052-sub.html#Scope__Upper__SUB">Scope::Upper::SUB</a>, avg 516ns/call</div></div></td></tr>
+<tr><td class="h"><a name="246"></a>246</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
+<tr><td class="h"><a name="247"></a>247</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="248"></a>248</td><td class="c3">1</td><td class="c3"><span title="Avg 6µs">6µs</span></td><td></td><td></td><td class="s">1;</td></tr>
+<tr><td class="h"><a name="249"></a>249</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="250"></a>250</td><td></td><td></td><td></td><td></td><td class="s">=head1 BUGS / TODO</td></tr>
+<tr><td class="h"><a name="251"></a>251</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="252"></a>252</td><td></td><td></td><td></td><td></td><td class="s">=over</td></tr>
+<tr><td class="h"><a name="253"></a>253</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="254"></a>254</td><td></td><td></td><td></td><td></td><td class="s">=item * Make this into a stream parser with GraphML</td></tr>
+<tr><td class="h"><a name="255"></a>255</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="256"></a>256</td><td></td><td></td><td></td><td></td><td class="s">=item * Simply field -> attribute correspondence for nodes and edges</td></tr>
+<tr><td class="h"><a name="257"></a>257</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="258"></a>258</td><td></td><td></td><td></td><td></td><td class="s">=item * Share key name constants with Collation.pm</td></tr>
+<tr><td class="h"><a name="259"></a>259</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="260"></a>260</td><td></td><td></td><td></td><td></td><td class="s">=back</td></tr>
+<tr><td class="h"><a name="261"></a>261</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="262"></a>262</td><td></td><td></td><td></td><td></td><td class="s">=head1 LICENSE</td></tr>
+<tr><td class="h"><a name="263"></a>263</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="264"></a>264</td><td></td><td></td><td></td><td></td><td class="s">This package is free software and is provided "as is" without express</td></tr>
+<tr><td class="h"><a name="265"></a>265</td><td></td><td></td><td></td><td></td><td class="s">or implied warranty. You can redistribute it and/or modify it under</td></tr>
+<tr><td class="h"><a name="266"></a>266</td><td></td><td></td><td></td><td></td><td class="s">the same terms as Perl itself.</td></tr>
+<tr><td class="h"><a name="267"></a>267</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="268"></a>268</td><td></td><td></td><td></td><td></td><td class="s">=head1 AUTHOR</td></tr>
+<tr><td class="h"><a name="269"></a>269</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="270"></a>270</td><td></td><td></td><td></td><td></td><td class="s">Tara L Andrews E<lt>aurum@cpan.orgE<gt></td></tr>
+<tr><td class="s"><a name=""></a> </td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
+<tr><td class="h"><a name="Text__Tradition__Parser__Self__CORE_sort"></a></td><td></td><td></td><td></td><td></td><td class="s"><div class="calls"><div class="calls_in"># spent 2.21ms (437µs+1.77) within Text::Tradition::Parser::Self::CORE:sort which was called:
+# once (437µs+1.77ms) by Text::Tradition::Parser::Self::parse at <a href="lib-Text-Tradition-Parser-Self-pm-2520-sub.html#208">line 208</a></div></div>sub Text::Tradition::Parser::Self::CORE:sort; # opcode<br /> </td></tr>
+</tbody></table></div>
+
+ <script type="text/javascript"> $(document).ready(function() {
+
+ $("#subs_table").tablesorter({
+ sortList: [[3,1]],
+ headers: {
+ 3: { sorter: 'fmt_time' },
+ 4: { sorter: 'fmt_time' }
+ }
+ });
+
+ } ); </script>
+
+ <div class="footer">Report produced by the
+ <a href="http://search.cpan.org/dist/Devel-NYTProf/">NYTProf 4.06</a>
+ Perl profiler, developed by
+ <a href="http://www.linkedin.com/in/timbunce">Tim Bunce</a> and
+ <a href="http://code.nytimes.com">Adam Kaplan</a>.
+ </div>
+ <br /><br /><br /><br /><br /><br /><br /><br /><br /><br />
+ </body></html>
\ No newline at end of file
projects / scpubgit/stemmatology.git / blobdiff