use warnings;
use Getopt::Long;
use Text::Tradition;
-use Text::Tradition::Stemma;
+use Text::Tradition::StemmaUtil;
binmode STDERR, ":utf8";
binmode STDOUT, ":utf8";
eval { no warnings; binmode $DB::OUT, ":utf8"; };
my( $informat, $inbase, $outformat, $help, $linear, $name, $HACK, $sep )
- = ( '', '', '', '', 1, 'Tradition', 0, ',' );
+ = ( '', '', '', '', 1, 'Tradition', 0, "\t" );
GetOptions( 'i|in=s' => \$informat,
'b|base=s' => \$inbase,
### Custom hacking
# Remove witnesses C, E, G in the Matthew text
if( $HACK ) {
- foreach( $tradition->collation->paths() ) {
- $tradition->collation->del_path( $_ ) if $_->label =~ /^[ceg]$/i;
- }
- foreach( $tradition->collation->readings() ) {
- if( !$_->outgoing() && !$_->incoming() ) {
- print STDERR "Deleting reading " . $_->label . "\n";
- $tradition->collation->del_reading( $_ );
- }
- }
+ my @togo = qw/ C E G /;
+ $tradition->collation->clear_witness( @togo );
+ $tradition->del_witness( @togo );
}
# Now output what we have been asked to.
if( $outformat eq 'stemma' ) {
- my $stemma = Text::Tradition::Stemma->new(
- 'collation' => $tradition->collation );
- my( $result, $tree ) = $stemma->run_phylip_pars();
+ my $cdata = character_input( $tradition->collation->make_alignment_table );
+ my( $result, $tree ) = phylip_pars( $cdata );
if( $result ) {
print $tree;
} else {