use strict;
use warnings;
use Storable qw /dclone/;
-use Text::CSV::Simple;
+use Text::CSV::Simple; # TODO convert to CSV_XS
=head1 NAME
=cut
sub read {
- my( $csv_file ) = @_;
+ my( $opts ) = @_;
my $parser = Text::CSV::Simple->new();
my @fields = qw/ reference text variant type context non_corr non_indep
length total origin /;
- my @lines = $parser->read_file( $ARGV[0] );
+ my @lines = $parser->read_file( $opts->{'file'} );
my @labels = @{shift( @lines )};
push( @fields, @labels[10..$#labels] );