use Encode qw( decode_utf8 );
use File::Temp;
+use File::Which;
use Graph;
use IPC::Run qw( run binary );
-use Text::CSV_XS;
+use Text::CSV;
use Text::Tradition::Collation::Reading;
use Text::Tradition::Collation::RelationshipStore;
use Text::Tradition::Error;
handles => {
relationships => 'relationships',
related_readings => 'related_readings',
+ get_relationship => 'get_relationship',
del_relationship => 'del_relationship',
},
writer => '_set_relations',
has 'tradition' => (
is => 'ro',
isa => 'Text::Tradition',
+ writer => '_set_tradition',
weak_ref => 1,
);
default => ' (a.c.)',
);
+has 'wordsep' => (
+ is => 'rw',
+ isa => 'Str',
+ default => ' ',
+ );
+
has 'start' => (
is => 'ro',
isa => 'Text::Tradition::Collation::Reading',
predicate => 'has_cached_svg',
clearer => 'wipe_svg',
);
+
+has 'cached_table' => (
+ is => 'rw',
+ isa => 'HashRef',
+ predicate => 'has_cached_table',
+ clearer => 'wipe_table',
+ );
+
+has '_graphcalc_done' => (
+ is => 'rw',
+ isa => 'Bool',
+ default => undef,
+ );
=head1 NAME
a text has more than one possible reading due to scribal corrections or
the like. Defaults to ' (a.c.)'.
+=item * wordsep - The string used to separate words in the original text.
+Defaults to ' '.
+
=back
=head1 ACCESSORS
=head2 ac_label
+=head2 wordsep
+
Simple accessors for collation attributes.
=head2 start
Removes the given reading from the collation, implicitly removing its
paths and relationships.
-=head2 merge_readings( $main, $second )
+=head2 merge_readings( $main, $second, $concatenate, $with_str )
+
+Merges the $second reading into the $main one. If $concatenate is true, then
+the merged node will carry the text of both readings, concatenated with either
+$with_str (if specified) or a sensible default (the empty string if the
+appropriate 'join_*' flag is set on either reading, or else $self->wordsep.)
-Merges the $second reading into the $main one.
-The arguments may be either readings or reading IDs.
+The first two arguments may be either readings or reading IDs.
=head2 has_reading( $id )
if( $self->reading( $reading->id ) ) {
throw( "Collation already has a reading with id " . $reading->id );
}
+ $self->_graphcalc_done(0);
$self->_add_reading( $reading->id => $reading );
# Once the reading has been added, put it in both graphs.
$self->sequence->add_vertex( $reading->id );
$arg = $arg->id;
}
# Remove the reading from the graphs.
+ $self->_graphcalc_done(0);
+ $self->_clear_cache; # Explicitly clear caches to GC the reading
$self->sequence->delete_vertex( $arg );
$self->relations->delete_reading( $arg );
$self->$orig( $arg );
};
-# merge_readings( $main, $to_be_deleted );
+=begin testing
+
+use Text::Tradition;
+
+my $cxfile = 't/data/Collatex-16.xml';
+my $t = Text::Tradition->new(
+ 'name' => 'inline',
+ 'input' => 'CollateX',
+ 'file' => $cxfile,
+ );
+my $c = $t->collation;
+
+my $rno = scalar $c->readings;
+# Split n21 for testing purposes
+my $new_r = $c->add_reading( { 'id' => 'n21p0', 'text' => 'un', 'join_next' => 1 } );
+my $old_r = $c->reading( 'n21' );
+$old_r->alter_text( 'to' );
+$c->del_path( 'n20', 'n21', 'A' );
+$c->add_path( 'n20', 'n21p0', 'A' );
+$c->add_path( 'n21p0', 'n21', 'A' );
+$c->flatten_ranks();
+ok( $c->reading( 'n21p0' ), "New reading exists" );
+is( scalar $c->readings, $rno, "Reading add offset by flatten_ranks" );
+
+# Combine n3 and n4 ( with his )
+$c->merge_readings( 'n3', 'n4', 1 );
+ok( !$c->reading('n4'), "Reading n4 is gone" );
+is( $c->reading('n3')->text, 'with his', "Reading n3 has both words" );
+
+# Collapse n9 and n10 ( rood / root )
+$c->merge_readings( 'n9', 'n10' );
+ok( !$c->reading('n10'), "Reading n10 is gone" );
+is( $c->reading('n9')->text, 'rood', "Reading n9 has an unchanged word" );
+
+# Combine n21 and n21p0
+my $remaining = $c->reading('n21');
+$remaining ||= $c->reading('n22'); # one of these should still exist
+$c->merge_readings( 'n21p0', $remaining, 1 );
+ok( !$c->reading('n21'), "Reading $remaining is gone" );
+is( $c->reading('n21p0')->text, 'unto', "Reading n21p0 merged correctly" );
+
+=end testing
+
+=cut
sub merge_readings {
my $self = shift;
# We only need the IDs for adding paths to the graph, not the reading
# objects themselves.
- my( $kept, $deleted, $combine_char ) = $self->_stringify_args( @_ );
+ my( $kept, $deleted, $combine, $combine_char ) = $self->_stringify_args( @_ );
+ $self->_graphcalc_done(0);
# The kept reading should inherit the paths and the relationships
# of the deleted reading.
$self->relations->merge_readings( $kept, $deleted, $combine_char );
# Do the deletion deed.
- if( $combine_char ) {
+ if( $combine ) {
my $kept_obj = $self->reading( $kept );
- my $new_text = join( $combine_char, $kept_obj->text,
- $self->reading( $deleted )->text );
- $kept_obj->alter_text( $new_text );
+ my $del_obj = $self->reading( $deleted );
+ my $joinstr = $combine_char;
+ unless( defined $joinstr ) {
+ $joinstr = '' if $kept_obj->join_next || $del_obj->join_prior;
+ $joinstr = $self->wordsep unless defined $joinstr;
+ }
+ $kept_obj->alter_text( join( $joinstr, $kept_obj->text, $del_obj->text ) );
}
$self->del_reading( $deleted );
}
# Helper function for manipulating the graph.
sub _stringify_args {
- my( $self, $first, $second, $arg ) = @_;
+ my( $self, $first, $second, @args ) = @_;
$first = $first->id
if ref( $first ) eq 'Text::Tradition::Collation::Reading';
$second = $second->id
if ref( $second ) eq 'Text::Tradition::Collation::Reading';
- return( $first, $second, $arg );
+ return( $first, $second, @args );
}
# Helper function for manipulating the graph.
# objects themselves.
my( $source, $target, $wit ) = $self->_stringify_args( @_ );
+ $self->_graphcalc_done(0);
# Connect the readings
$self->sequence->add_edge( $source, $target );
# Note the witness in question
# objects themselves.
my( $source, $target, $wit ) = $self->_stringify_args( @args );
+ $self->_graphcalc_done(0);
if( $self->sequence->has_edge_attribute( $source, $target, $wit ) ) {
$self->sequence->delete_edge_attribute( $source, $target, $wit );
}
sub clear_witness {
my( $self, @sigils ) = @_;
+ $self->_graphcalc_done(0);
# Clear the witness(es) out of the paths
foreach my $e ( $self->paths ) {
foreach my $sig ( @sigils ) {
my( $source, $target, $opts ) = $self->_stringify_args( @_ );
my( @vectors ) = $self->relations->add_relationship( $source,
$self->reading( $source ), $target, $self->reading( $target ), $opts );
- # Force a full rank recalculation every time. Yuck.
- $self->calculate_ranks() if $self->end->has_rank;
+ $self->_graphcalc_done(0);
return @vectors;
}
+around qw/ get_relationship del_relationship / => sub {
+ my $orig = shift;
+ my $self = shift;
+ my @args = @_;
+ if( @args == 1 && ref( $args[0] ) eq 'ARRAY' ) {
+ @args = @{$_[0]};
+ }
+ my( $source, $target ) = $self->_stringify_args( @args );
+ $self->$orig( $source, $target );
+};
+
=head2 reading_witnesses( $reading )
Return a list of sigils corresponding to the witnesses in which the reading appears.
my $wits = $self->sequence->get_edge_attributes( @$e );
@all_witnesses{ keys %$wits } = 1;
}
+ my $acstr = $self->ac_label;
+ foreach my $acwit ( grep { $_ =~ s/^(.*)\Q$acstr\E$/$1/ } keys %all_witnesses ) {
+ delete $all_witnesses{$acwit.$acstr} if exists $all_witnesses{$acwit};
+ }
return keys %all_witnesses;
}
=head2 as_svg( \%options )
Returns an SVG string that represents the graph, via as_dot and graphviz.
-See as_dot for a list of options.
+See as_dot for a list of options. Must have GraphViz (dot) installed to run.
=cut
sub as_svg {
my( $self, $opts ) = @_;
+ throw( "Need GraphViz installed to output SVG" )
+ unless File::Which::which( 'dot' );
my $want_subgraph = exists $opts->{'from'} || exists $opts->{'to'};
+ $self->calculate_ranks() unless( $self->_graphcalc_done || $opts->{'nocalc'} );
if( !$self->has_cached_svg || $opts->{'recalc'} || $want_subgraph ) {
my @cmd = qw/dot -Tsvg/;
my( $svg, $err );
my $color_common = $opts->{'color_common'} if $opts;
my $STRAIGHTENHACK = !$startrank && !$endrank && $self->end->rank
&& $self->end->rank > 100;
+ $STRAIGHTENHACK = 1 if $opts->{'straight'}; # even for subgraphs or small graphs
# Check the arguments
if( $startrank ) {
}
if( $STRAIGHTENHACK ) {
## HACK part 1
- $dot .= "\tsubgraph { rank=same \"#START#\" \"#SILENT#\" }\n";
+ my $startlabel = $startrank ? 'SUBSTART' : 'START';
+ $dot .= "\tsubgraph { rank=same \"#$startlabel#\" \"#SILENT#\" }\n";
$dot .= "\t\"#SILENT#\" [ shape=diamond,color=white,penwidth=0,label=\"\" ];"
}
my %used; # Keep track of the readings that actually appear in the graph
next if $reading->id eq $reading->text;
my $rattrs;
my $label = $reading->text;
+ $label .= '-' if $reading->join_next;
+ $label = "-$label" if $reading->join_prior;
$label =~ s/\"/\\\"/g;
$rattrs->{'label'} = $label;
$rattrs->{'fillcolor'} = '#b3f36d' if $reading->is_common && $color_common;
}
# HACK part 2
if( $STRAIGHTENHACK ) {
- $dot .= "\t\"#END#\" -> \"#SILENT#\" [ color=white,penwidth=0 ];\n";
+ my $endlabel = $endrank ? 'SUBEND' : 'END';
+ $dot .= "\t\"#$endlabel#\" -> \"#SILENT#\" [ color=white,penwidth=0 ];\n";
}
$dot .= "}\n";
return @wits;
}
+# Helper function. Make a display label for the given witnesses, showing a.c.
+# witnesses only where the main witness is not also in the list.
sub _path_display_label {
my $self = shift;
- my @wits = sort @_;
+ my %wits;
+ map { $wits{$_} = 1 } @_;
+
+ # If an a.c. wit is listed, remove it if the main wit is also listed.
+ # Otherwise keep it for explicit listing.
+ my $aclabel = $self->ac_label;
+ my @disp_ac;
+ foreach my $w ( sort keys %wits ) {
+ if( $w =~ /^(.*)\Q$aclabel\E$/ ) {
+ if( exists $wits{$1} ) {
+ delete $wits{$w};
+ } else {
+ push( @disp_ac, $w );
+ }
+ }
+ }
+
+ # See if we are in a majority situation.
my $maj = scalar( $self->tradition->witnesses ) * 0.6;
- if( scalar @wits > $maj ) {
- # TODO break out a.c. wits
- return 'majority';
+ if( scalar keys %wits > $maj ) {
+ unshift( @disp_ac, 'majority' );
+ return join( ', ', @disp_ac );
} else {
- return join( ', ', @wits );
+ return join( ', ', sort keys %wits );
}
}
-
+
+=head2 readings_at_rank( $rank )
+
+Returns a list of readings at a given rank, taken from the alignment table.
+
+=cut
+
+sub readings_at_rank {
+ my( $self, $rank ) = @_;
+ my $table = $self->alignment_table;
+ # Table rank is real rank - 1.
+ my @elements = map { $_->{'tokens'}->[$rank-1] } @{$table->{'alignment'}};
+ my %readings;
+ foreach my $e ( @elements ) {
+ next unless ref( $e ) eq 'HASH';
+ next unless exists $e->{'t'};
+ $readings{$e->{'t'}->id} = $e->{'t'};
+ }
+ return values %readings;
+}
=head2 as_graphml
sub as_graphml {
my( $self ) = @_;
-
+ $self->calculate_ranks unless $self->_graphcalc_done;
+
# Some namespaces
my $graphml_ns = 'http://graphml.graphdrawing.org/xmlns';
my $xsi_ns = 'http://www.w3.org/2001/XMLSchema-instance';
$graphml->setDocumentElement( $root );
$root->setNamespace( $xsi_ns, 'xsi', 0 );
$root->setAttributeNS( $xsi_ns, 'schemaLocation', $graphml_schema );
+
+ # List of attribute types to save on our objects and their corresponding
+ # GraphML types
+ my %save_types = (
+ 'Str' => 'string',
+ 'Int' => 'int',
+ 'Bool' => 'boolean',
+ 'RelationshipType' => 'string',
+ 'RelationshipScope' => 'string',
+ );
+
+ # List of attribute names *not* to save on our objects.
+ # We will also not save any attribute beginning with _.
+ my %skipsave;
+ map { $skipsave{$_} = 1 } qw/ cached_svg /;
- # Add the data keys for the graph
+ # Add the data keys for the graph. Include an extra key 'version' for the
+ # GraphML output version.
my %graph_data_keys;
my $gdi = 0;
- my @graph_attributes = qw/ version wit_list_separator baselabel linear ac_label /;
- foreach my $datum ( @graph_attributes ) {
+ my %graph_attributes = ( 'version' => 'string' );
+ # Graph attributes include those of Tradition and those of Collation.
+ my %gattr_from;
+ my $tmeta = $self->tradition->meta;
+ my $cmeta = $self->meta;
+ map { $gattr_from{$_->name} = 'Tradition' } $tmeta->get_all_attributes;
+ map { $gattr_from{$_->name} = 'Collation' } $cmeta->get_all_attributes;
+ foreach my $attr ( ( $tmeta->get_all_attributes, $cmeta->get_all_attributes ) ) {
+ next if $attr->name =~ /^_/;
+ next if $skipsave{$attr->name};
+ next unless $save_types{$attr->type_constraint->name};
+ $graph_attributes{$attr->name} = $save_types{$attr->type_constraint->name};
+ }
+
+ foreach my $datum ( sort keys %graph_attributes ) {
$graph_data_keys{$datum} = 'dg'.$gdi++;
my $key = $root->addNewChild( $graphml_ns, 'key' );
$key->setAttribute( 'attr.name', $datum );
- $key->setAttribute( 'attr.type', $key eq 'linear' ? 'boolean' : 'string' );
+ $key->setAttribute( 'attr.type', $graph_attributes{$datum} );
$key->setAttribute( 'for', 'graph' );
$key->setAttribute( 'id', $graph_data_keys{$datum} );
}
- # Add the data keys for nodes
+ # Add the data keys for reading nodes
+ my %reading_attributes;
+ my $rmeta = Text::Tradition::Collation::Reading->meta;
+ foreach my $attr( $rmeta->get_all_attributes ) {
+ next if $attr->name =~ /^_/;
+ next if $skipsave{$attr->name};
+ next unless $save_types{$attr->type_constraint->name};
+ $reading_attributes{$attr->name} = $save_types{$attr->type_constraint->name};
+ }
my %node_data_keys;
my $ndi = 0;
- my %node_data = (
- id => 'string',
- text => 'string',
- rank => 'string',
- is_start => 'boolean',
- is_end => 'boolean',
- is_lacuna => 'boolean',
- );
- foreach my $datum ( keys %node_data ) {
+ foreach my $datum ( sort keys %reading_attributes ) {
$node_data_keys{$datum} = 'dn'.$ndi++;
my $key = $root->addNewChild( $graphml_ns, 'key' );
$key->setAttribute( 'attr.name', $datum );
- $key->setAttribute( 'attr.type', $node_data{$datum} );
+ $key->setAttribute( 'attr.type', $reading_attributes{$datum} );
$key->setAttribute( 'for', 'node' );
$key->setAttribute( 'id', $node_data_keys{$datum} );
}
- # Add the data keys for edges, i.e. witnesses
+ # Add the data keys for edges, that is, paths and relationships. Path
+ # data does not come from a Moose class so is here manually.
my $edi = 0;
my %edge_data_keys;
- my %edge_data = (
- class => 'string', # Class, deprecated soon
+ my %edge_attributes = (
witness => 'string', # ID/label for a path
- relationship => 'string', # ID/label for a relationship
extra => 'boolean', # Path key
- scope => 'string', # Relationship key
- non_correctable => 'boolean', # Relationship key
- non_independent => 'boolean', # Relationship key
);
- foreach my $datum ( keys %edge_data ) {
+ my @path_attributes = keys %edge_attributes; # track our manual additions
+ my $pmeta = Text::Tradition::Collation::Relationship->meta;
+ foreach my $attr( $pmeta->get_all_attributes ) {
+ next if $attr->name =~ /^_/;
+ next if $skipsave{$attr->name};
+ next unless $save_types{$attr->type_constraint->name};
+ $edge_attributes{$attr->name} = $save_types{$attr->type_constraint->name};
+ }
+ foreach my $datum ( sort keys %edge_attributes ) {
$edge_data_keys{$datum} = 'de'.$edi++;
my $key = $root->addNewChild( $graphml_ns, 'key' );
$key->setAttribute( 'attr.name', $datum );
- $key->setAttribute( 'attr.type', $edge_data{$datum} );
+ $key->setAttribute( 'attr.type', $edge_attributes{$datum} );
$key->setAttribute( 'for', 'edge' );
$key->setAttribute( 'id', $edge_data_keys{$datum} );
}
$sgraph->setAttribute( 'parse.order', 'nodesfirst' );
# Collation attribute data
- foreach my $datum ( @graph_attributes ) {
- my $value = $datum eq 'version' ? '3.0' : $self->$datum;
+ foreach my $datum ( keys %graph_attributes ) {
+ my $value;
+ if( $datum eq 'version' ) {
+ $value = '3.1';
+ } elsif( $gattr_from{$datum} eq 'Tradition' ) {
+ $value = $self->tradition->$datum;
+ } else {
+ $value = $self->$datum;
+ }
_add_graphml_data( $sgraph, $graph_data_keys{$datum}, $value );
}
my $node_xmlid = 'n' . $node_ctr++;
$node_hash{ $n->id } = $node_xmlid;
$node_el->setAttribute( 'id', $node_xmlid );
- foreach my $d ( keys %node_data ) {
+ foreach my $d ( keys %reading_attributes ) {
my $nval = $n->$d;
_add_graphml_data( $node_el, $node_data_keys{$d}, $nval )
if defined $nval;
_add_graphml_data( $edge_el, $edge_data_keys{'extra'}, $aclabel );
}
_add_graphml_data( $edge_el, $edge_data_keys{'witness'}, $base );
- _add_graphml_data( $edge_el, $edge_data_keys{'class'}, 'path' );
}
}
# Add the relationship graph to the XML
+ map { delete $edge_data_keys{$_} } @path_attributes;
$self->relations->_as_graphml( $graphml_ns, $root, \%node_hash,
$node_data_keys{'id'}, \%edge_data_keys );
sub as_csv {
my( $self ) = @_;
- my $table = $self->make_alignment_table;
- my $csv = Text::CSV_XS->new( { binary => 1, quote_null => 0 } );
+ my $table = $self->alignment_table;
+ my $csv = Text::CSV->new( { binary => 1, quote_null => 0 } );
my @result;
# Make the header row
$csv->combine( map { $_->{'witness'} } @{$table->{'alignment'}} );
# Make the rest of the rows
foreach my $idx ( 0 .. $table->{'length'} - 1 ) {
my @rowobjs = map { $_->{'tokens'}->[$idx] } @{$table->{'alignment'}};
- my @row = map { $_ ? $_->{'t'} : $_ } @rowobjs;
+ my @row = map { $_ ? $_->{'t'}->text : $_ } @rowobjs;
$csv->combine( @row );
push( @result, decode_utf8( $csv->string ) );
}
return join( "\n", @result );
}
-=head2 make_alignment_table( $use_refs, $include_witnesses )
+=head2 alignment_table( $use_refs, $include_witnesses )
Return a reference to an alignment table, in a slightly enhanced CollateX
format which looks like this:
=cut
-sub make_alignment_table {
- my( $self, $noderefs, $include ) = @_;
+sub alignment_table {
+ my( $self ) = @_;
+ $self->calculate_ranks() unless $self->_graphcalc_done;
+ return $self->cached_table if $self->has_cached_table;
+
# Make sure we can do this
throw( "Need a linear graph in order to make an alignment table" )
unless $self->linear;
my $table = { 'alignment' => [], 'length' => $self->end->rank - 1 };
my @all_pos = ( 1 .. $self->end->rank - 1 );
foreach my $wit ( sort { $a->sigil cmp $b->sigil } $self->tradition->witnesses ) {
- if( $include ) {
- next unless $include->{$wit->sigil};
- }
# print STDERR "Making witness row(s) for " . $wit->sigil . "\n";
my @wit_path = $self->reading_sequence( $self->start, $self->end, $wit->sigil );
- my @row = _make_witness_row( \@wit_path, \@all_pos, $noderefs );
+ my @row = _make_witness_row( \@wit_path, \@all_pos );
push( @{$table->{'alignment'}},
{ 'witness' => $wit->sigil, 'tokens' => \@row } );
if( $wit->is_layered ) {
my @wit_ac_path = $self->reading_sequence( $self->start, $self->end,
$wit->sigil.$self->ac_label );
- my @ac_row = _make_witness_row( \@wit_ac_path, \@all_pos, $noderefs );
+ my @ac_row = _make_witness_row( \@wit_ac_path, \@all_pos );
push( @{$table->{'alignment'}},
{ 'witness' => $wit->sigil.$self->ac_label, 'tokens' => \@ac_row } );
}
}
- return $table;
+ $self->cached_table( $table );
+ return $table;
}
sub _make_witness_row {
- my( $path, $positions, $noderefs ) = @_;
+ my( $path, $positions ) = @_;
my %char_hash;
map { $char_hash{$_} = undef } @$positions;
my $debug = 0;
$rtext = '#LACUNA#' if $rdg->is_lacuna;
print STDERR "rank " . $rdg->rank . "\n" if $debug;
# print STDERR "No rank for " . $rdg->id . "\n" unless defined $rdg->rank;
- $char_hash{$rdg->rank} = $noderefs ? { 't' => $rdg }
- : { 't' => $rtext };
+ $char_hash{$rdg->rank} = { 't' => $rdg };
}
my @row = map { $char_hash{$_} } @$positions;
# Fill in lacuna markers for undef spots in the row
foreach my $el ( @row ) {
# If we are using node reference, make the lacuna node appear many times
# in the table. If not, use the lacuna tag.
- if( $last_el && _el_is_lacuna( $last_el ) && !defined $el ) {
- $el = $noderefs ? $last_el : { 't' => '#LACUNA#' };
+ if( $last_el && $last_el->{'t'}->is_lacuna && !defined $el ) {
+ $el = $last_el;
}
push( @filled_row, $el );
$last_el = $el;
return @filled_row;
}
-# Tiny utility function to say if a table element is a lacuna
-sub _el_is_lacuna {
- my $el = shift;
- return 1 if $el->{'t'} eq '#LACUNA#';
- return 1 if ref( $el->{'t'} ) eq 'Text::Tradition::Collation::Reading'
- && $el->{'t'}->is_lacuna;
- return 0;
-}
-
-# Helper to turn the witnesses along columns rather than rows. Assumes
-# equal-sized rows.
-sub _turn_table {
- my( $table ) = @_;
- my $result = [];
- return $result unless scalar @$table;
- my $nrows = scalar @{$table->[0]};
- foreach my $idx ( 0 .. $nrows - 1 ) {
- foreach my $wit ( 0 .. $#{$table} ) {
- $result->[$idx]->[$wit] = $table->[$wit]->[$idx];
- }
- }
- return $result;
-}
-
=head1 NAVIGATION METHODS
=head2 reading_sequence( $first, $last, $sigil, $backup )
return @common;
}
-=head2 path_text( $sigil, $mainsigil [, $start, $end ] )
+=head2 path_text( $sigil, [, $start, $end ] )
Returns the text of a witness (plus its backup, if we are using a layer)
as stored in the collation. The text is returned as a string, where the
$start = $self->start unless $start;
$end = $self->end unless $end;
my @path = grep { !$_->is_meta } $self->reading_sequence( $start, $end, $wit );
- return join( ' ', map { $_->text } @path );
+ my $pathtext = '';
+ my $last;
+ foreach my $r ( @path ) {
+ if( $r->join_prior || !$last || $last->join_next ) {
+ $pathtext .= $r->text;
+ } else {
+ $pathtext .= ' ' . $r->text;
+ }
+ $last = $r;
+ }
+ return $pathtext;
}
=head1 INITIALIZATION METHODS
my( $self, $wit ) = @_;
my @chain = @{$wit->path};
my $sig = $wit->sigil;
+ # Add start and end if necessary
+ unshift( @chain, $self->start ) unless $chain[0] eq $self->start;
+ push( @chain, $self->end ) unless $chain[-1] eq $self->end;
foreach my $idx ( 0 .. $#chain-1 ) {
$self->add_path( $chain[$idx], $chain[$idx+1], $sig );
}
if( $wit->is_layered ) {
@chain = @{$wit->uncorrected_path};
+ unshift( @chain, $self->start ) unless $chain[0] eq $self->start;
+ push( @chain, $self->end ) unless $chain[-1] eq $self->end;
foreach my $idx( 0 .. $#chain-1 ) {
my $source = $chain[$idx];
my $target = $chain[$idx+1];
my $c = $t->collation;
# Make an svg
-my $svg = $c->as_svg;
-is( substr( $svg, 0, 5 ), '<?xml', "Got XML doc for svg" );
-ok( $c->has_cached_svg, "SVG was cached" );
-is( $c->as_svg, $svg, "Cached SVG returned upon second call" );
+my $table = $c->alignment_table;
+ok( $c->has_cached_table, "Alignment table was cached" );
+is( $c->alignment_table, $table, "Cached table returned upon second call" );
$c->calculate_ranks;
-is( $c->as_svg, $svg, "Cached SVG retained with no rank change" );
-$c->add_relationship( 'n9', 'n23', { 'type' => 'spelling' } );
-isnt( $c->as_svg, $svg, "SVG changed after relationship add" );
+is( $c->alignment_table, $table, "Cached table retained with no rank change" );
+$c->add_relationship( 'n24', 'n23', { 'type' => 'spelling' } );
+isnt( $c->alignment_table, $table, "Alignment table changed after relationship add" );
=end testing
$r->rank( $node_ranks->{$rel_containers{$r->id}} );
} else {
# Die. Find the last rank we calculated.
- my @all_defined = sort { $node_ranks->{$rel_containers{$a->id}}
- <=> $node_ranks->{$rel_containers{$b->id}} }
+ my @all_defined = sort { ( $node_ranks->{$rel_containers{$a->id}}||-1 )
+ <=> ( $node_ranks->{$rel_containers{$b->id}}||-1 ) }
$self->readings;
my $last = pop @all_defined;
throw( "Ranks not calculated after $last - do you have a cycle in the graph?" );
}
}
- # Do we need to invalidate the cached SVG?
- if( $self->has_cached_svg ) {
+ # Do we need to invalidate the cached data?
+ if( $self->has_cached_svg || $self->has_cached_table ) {
foreach my $r ( $self->readings ) {
- next if $existing_ranks{$r} == $r->rank;
- $self->wipe_svg;
+ next if defined( $existing_ranks{$r} )
+ && $existing_ranks{$r} == $r->rank;
+ # Something has changed, so clear the cache
+ $self->_clear_cache;
+ # ...and recalculate the common readings.
+ $self->calculate_common_readings();
last;
}
}
+ # The graph calculation information is now up to date.
+ $self->_graphcalc_done(1);
}
sub _assign_rank {
return @next_nodes;
}
+sub _clear_cache {
+ my $self = shift;
+ $self->wipe_svg if $self->has_cached_svg;
+ $self->wipe_table if $self->has_cached_table;
+}
+
+
=head2 flatten_ranks
A convenience method for parsing collation data. Searches the graph for readings
sub flatten_ranks {
my $self = shift;
my %unique_rank_rdg;
+ my $changed;
foreach my $rdg ( $self->readings ) {
next unless $rdg->has_rank;
my $key = $rdg->rank . "||" . $rdg->text;
if( exists $unique_rank_rdg{$key} ) {
# Combine!
# print STDERR "Combining readings at same rank: $key\n";
+ $changed = 1;
$self->merge_readings( $unique_rank_rdg{$key}, $rdg );
# TODO see if this now makes a common point.
} else {
$unique_rank_rdg{$key} = $rdg;
}
}
-}
-
-=head2 remove_collations
-
-Another convenience method for parsing. Removes all 'collation' relationships
-that were defined in order to get the reading ranks to be correct.
-
-=begin testing
-
-use Text::Tradition;
-
-my $cxfile = 't/data/Collatex-16.xml';
-my $t = Text::Tradition->new(
- 'name' => 'inline',
- 'input' => 'CollateX',
- 'file' => $cxfile,
- );
-my $c = $t->collation;
-
-isnt( $c->reading('n23')->rank, $c->reading('n9')->rank, "Rank skew exists" );
-$c->add_relationship( 'n23', 'n9', { 'type' => 'collated', 'scope' => 'local' } );
-is( scalar $c->relationships, 4, "Found all expected relationships" );
-$c->remove_collations;
-is( scalar $c->relationships, 3, "Collated relationships now gone" );
-is( $c->reading('n23')->rank, $c->reading('n9')->rank, "Aligned ranks were preserved" );
-
-=end testing
-
-=cut
-
-sub remove_collations {
- my $self = shift;
- foreach my $reledge ( $self->relationships ) {
- my $relobj = $self->relations->get_relationship( $reledge );
- if( $relobj && $relobj->type eq 'collated' ) {
- $self->relations->delete_relationship( $reledge );
- }
- }
+ # If we merged readings, the ranks are still fine but the alignment
+ # table is wrong. Wipe it.
+ $self->wipe_table() if $changed;
}
is( scalar @common, 8, "Found correct number of common readings" );
my @marked = sort $c->common_readings();
is( scalar @common, 8, "All common readings got marked as such" );
-my @expected = qw/ n1 n12 n16 n19 n20 n5 n6 n7 /;
+my @expected = qw/ n1 n11 n16 n19 n20 n5 n6 n7 /;
is_deeply( \@marked, \@expected, "Found correct list of common readings" );
=end testing
sub calculate_common_readings {
my $self = shift;
my @common;
- my $table = $self->make_alignment_table( 1 );
+ map { $_->is_common( 0 ) } $self->readings;
+ # Implicitly calls calculate_ranks
+ my $table = $self->alignment_table;
foreach my $idx ( 0 .. $table->{'length'} - 1 ) {
- my @row = map { $_->{'tokens'}->[$idx]->{'t'} } @{$table->{'alignment'}};
+ my @row = map { $_->{'tokens'}->[$idx]
+ ? $_->{'tokens'}->[$idx]->{'t'} : '' }
+ @{$table->{'alignment'}};
my %hash;
foreach my $r ( @row ) {
if( $r ) {
sub text_from_paths {
my $self = shift;
foreach my $wit ( $self->tradition->witnesses ) {
- my @text = split( /\s+/,
- $self->reading_sequence( $self->start, $self->end, $wit->sigil ) );
+ my @readings = $self->reading_sequence( $self->start, $self->end, $wit->sigil );
+ my @text;
+ foreach my $r ( @readings ) {
+ next if $r->is_meta;
+ push( @text, $r->text );
+ }
$wit->text( \@text );
if( $wit->is_layered ) {
- my @uctext = split( /\s+/,
- $self->reading_sequence( $self->start, $self->end,
- $wit->sigil.$self->ac_label ) );
- $wit->text( \@uctext );
+ my @ucrdgs = $self->reading_sequence( $self->start, $self->end,
+ $wit->sigil.$self->ac_label );
+ my @uctext;
+ foreach my $r ( @ucrdgs ) {
+ next if $r->is_meta;
+ push( @uctext, $r->text );
+ }
+ $wit->layertext( \@uctext );
}
}
}
);
my $c = $t->collation;
-is( $c->common_predecessor( 'n9', 'n23' )->id,
+is( $c->common_predecessor( 'n24', 'n23' )->id,
'n20', "Found correct common predecessor" );
-is( $c->common_successor( 'n9', 'n23' )->id,
+is( $c->common_successor( 'n24', 'n23' )->id,
'#END#', "Found correct common successor" );
is( $c->common_predecessor( 'n19', 'n17' )->id,
'n16', "Found correct common predecessor for readings on same path" );
-is( $c->common_successor( 'n21', 'n26' )->id,
+is( $c->common_successor( 'n21', 'n10' )->id,
'#END#', "Found correct common successor for readings on same path" );
=end testing