my $wits = $self->sequence->get_edge_attributes( @$e );
@all_witnesses{ keys %$wits } = 1;
}
+ my $acstr = $self->ac_label;
+ foreach my $acwit ( grep { $_ =~ s/^(.*)\Q$acstr\E$/$1/ } keys %all_witnesses ) {
+ delete $all_witnesses{$acwit.$acstr} if exists $all_witnesses{$acwit};
+ }
return keys %all_witnesses;
}
sub alignment_table {
my( $self ) = @_;
my $include; # see if we can ditch this
- ## DEBUG
return $self->cached_table if $self->has_cached_table;
# Make sure we can do this