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nytprof run results of /variantgraph/<ID> and /relation/<ID>/relationships
[scpubgit/stemmatology.git] / stemmaweb / nytprof-runs / variantgraph-uuid / lib-Text-Tradition-Directory-pm-1356-line.html
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4This file was generated by Devel::NYTProf version 4.06
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9 <title>Profile of lib/Text/Tradition/Directory.pm</title>
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14 <link rel="stylesheet" type="text/css" href="js/style-tablesorter.css" />
15 <script type="text/javascript">
16 // when a column is first clicked on to sort it, use descending order
17 // XXX doesn't seem to work (and not just because the tablesorter formatSortingOrder() is broken)
18 $.tablesorter.defaults.sortInitialOrder = "desc";
19 // add parser through the tablesorter addParser method
20 $.tablesorter.addParser({
21 id: 'fmt_time', // name of this parser
22 is: function(s) {
23 return false; // return false so this parser is not auto detected
24 },
25 format: function(orig) { // format data for normalization
26 // console.log(orig);
27 val = orig.replace(/ns/,'');
28 if (val != orig) { return val / (1000*1000*1000); }
29 val = orig.replace(/µs/,''); /* XXX use &micro; ? */
30 if (val != orig) { return val / (1000*1000); }
31 var val = orig.replace(/ms/,'');
32 if (val != orig) { return val / (1000); }
33 var val = orig.replace(/s/,'');
34 if (val != orig) { return val; }
35 if (orig == '0') { return orig; }
36 console.log('no match for fmt_time of '.concat(orig));
37 return orig;
38 },
39 type: 'numeric' // set type, either numeric or text
40 });
41 </script>
42</head>
43
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49<div class="headerForeground" style="float: left">
50 <span class="siteTitle">NYTProf Performance Profile</span>
51 <span class="siteSubtitle">&emsp;&emsp;<span>&laquo;&emsp;<span class="mode_btn"><a href="lib-Text-Tradition-Directory-pm-1356-block.html">block view</a></span>&emsp;&bull;&emsp;<span class="mode_btn mode_btn_selected">line view</span>&emsp;&bull;&emsp;<span class="mode_btn"><a href="lib-Text-Tradition-Directory-pm-1356-sub.html">sub view</a></span>&emsp;&raquo;</span><br />
52 For script/nytprof.pl
53 </span>
54</div>
55<div class="headerForeground" style="float: right; text-align: right">
56 <span class="siteTitle">&nbsp;</span>
57 <span class="siteSubtitle">Run on Thu May 31 16:29:39 2012<br />Reported on Thu May 31 16:40:12 2012</span>
58</div>
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110</div>
111
112<div class="body_content"><br />
113<table class="file_summary"><tr><td class="h">Filename</td><td align="left"><a href="file:///Users/edenc/share/src/stemmatology/stemmaweb/lib/Text/Tradition/Directory.pm">/Users/edenc/share/src/stemmatology/stemmaweb/lib/Text/Tradition/Directory.pm</a></td></tr>
114<tr><td class="h">Statements</td><td align="left">Executed 57 statements in 2.11ms</td></tr></table>
115
116 <table id="subs_table" border="1" cellpadding="0" class="tablesorter">
117 <caption>Subroutines</caption>
118 <thead>
119 <tr>
120 <th>Calls</th>
121 <th><span title="Number of Places sub is called from">P</span></th>
122 <th><span title="Number of Files sub is called from">F</span></th>
123 <th>Exclusive<br />Time</th>
124 <th>Inclusive<br />Time</th>
125 <th>Subroutine</th>
126 </tr>
127 </thead>
128 <tbody>
129<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">12.1ms</span></td><td class="c1"><span title="0.0%">14.0ms</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@6</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#6">BEGIN@6</a></span></td></tr>
130<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">1.23ms</span></td><td class="c0"><span title="0.1%">62.4ms</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@9</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#9">BEGIN@9</a></span></td></tr>
131<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">557&micro;s</span></td><td class="c0"><span title="0.3%">179ms</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@8</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#8">BEGIN@8</a></span></td></tr>
132<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">473&micro;s</span></td><td class="c0"><span title="0.1%">60.6ms</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@10</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#10">BEGIN@10</a></span></td></tr>
133<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">439&micro;s</span></td><td class="c1"><span title="0.0%">15.5ms</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@154</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#154">BEGIN@154</a></span></td></tr>
134<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c1"><span title="0.0%">91&micro;s</span></td><td class="c3"><span title="0.0%">101&micro;s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@3</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#3">BEGIN@3</a></span></td></tr>
135<tr><td class="c1">2</td><td class="c1">2</td><td class="c1">2</td><td class="c3"><span title="0.0%">42&micro;s</span></td><td class="c0"><span title="15.6%">8.22s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::save</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#224">save</a></span></td></tr>
136<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">29&micro;s</span></td><td class="c3"><span title="0.0%">189&micro;s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::__ANON__[lib/Text/Tradition/Directory.pm:168]</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#159">__ANON__[lib/Text/Tradition/Directory.pm:168]</a></span></td></tr>
137<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">22&micro;s</span></td><td class="c3"><span title="0.0%">40&micro;s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@4</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#4">BEGIN@4</a></span></td></tr>
138<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">22&micro;s</span></td><td class="c3"><span title="0.0%">6.88ms</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@5</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#5">BEGIN@5</a></span></td></tr>
139<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">18&micro;s</span></td><td class="c3"><span title="0.0%">405&micro;s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::tradition</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#229">tradition</a></span></td></tr>
140<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">15&micro;s</span></td><td class="c3"><span title="0.0%">17&micro;s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@11</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#11">BEGIN@11</a></span></td></tr>
141<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">10&micro;s</span></td><td class="c3"><span title="0.0%">39&micro;s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::BEGIN@7</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#7">BEGIN@7</a></span></td></tr>
142<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::__ANON__[lib/Text/Tradition/Directory.pm:195]</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#172">__ANON__[lib/Text/Tradition/Directory.pm:195]</a></span></td></tr>
143<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::__ANON__[lib/Text/Tradition/Directory.pm:214]</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#197">__ANON__[lib/Text/Tradition/Directory.pm:214]</a></span></td></tr>
144<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::__ANON__[lib/Text/Tradition/Directory.pm:271]</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#269">__ANON__[lib/Text/Tradition/Directory.pm:271]</a></span></td></tr>
145<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::throw</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#276">throw</a></span></td></tr>
146<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">Text::Tradition::Directory::::traditionlist</span>Text::Tradition::Directory::<a href="lib-Text-Tradition-Directory-pm-1356-line.html#247">traditionlist</a></span></td></tr>
147</tbody></table>
148 Call graph for these subroutines as a
149 <a href="http://en.wikipedia.org/wiki/Graphviz">Graphviz</a>
150 <a href="Users-edenc-share-src-stemmatology-stemmaweb-lib-Text-Tradition-Directory-pm.dot">dot language file</a>.
151
152 <table border="1" cellpadding="0">
153 <thead>
154 <tr><th>Line</th>
155 <th><span title="Number of statements executed">State<br />ments</span></th>
156 <th><span title="Time spend executing statements on the line,
157 excluding time spent executing statements in any called subroutines">Time<br />on line</span></th>
158 <th><span title="Number of subroutines calls">Calls</span></th>
159 <th><span title="Time spent in subroutines called (inclusive)">Time<br />in subs</span></th>
160 <th class="left_indent_header">Code</th>
161 </tr>
162
163 </thead>
164 <tbody>
165 <tr><td class="h"><a name="1"></a>1</td><td></td><td></td><td></td><td></td><td class="s">package Text::Tradition::Directory;</td></tr>
166<tr><td class="h"><a name="2"></a>2</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
167<tr><td class="h"><a name="3"></a>3</td><td class="c1">2</td><td class="c0"><span title="Avg 40&micro;s">79&micro;s</span></td><td class="c3">2</td><td class="c3">112&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 101&micro;s (91+11) within Text::Tradition::Directory::BEGIN@3 which was called:
168# once (91&micro;s+11&micro;s) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#3">line 3</a></div></div>use strict;<div class="calls"><div class="calls_out"># spent 101&micro;s making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#3">Text::Tradition::Directory::BEGIN@3</a>
169# spent 11&micro;s making 1 call to <a href="strict-pm-3-line.html#34">strict::import</a></div></div></td></tr>
170<tr><td class="h"><a name="4"></a>4</td><td class="c1">2</td><td class="c0"><span title="Avg 40&micro;s">80&micro;s</span></td><td class="c3">2</td><td class="c3">58&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 40&micro;s (22+18) within Text::Tradition::Directory::BEGIN@4 which was called:
171# once (22&micro;s+18&micro;s) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#4">line 4</a></div></div>use warnings;<div class="calls"><div class="calls_out"># spent 40&micro;s making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#4">Text::Tradition::Directory::BEGIN@4</a>
172# spent 18&micro;s making 1 call to <a href="warnings-pm-2-line.html#386">warnings::import</a></div></div></td></tr>
173<tr><td class="h"><a name="5"></a>5</td><td class="c1">2</td><td class="c0"><span title="Avg 33&micro;s">65&micro;s</span></td><td class="c3">2</td><td class="c0">13.7ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 6.88ms (22&micro;s+6.86) within Text::Tradition::Directory::BEGIN@5 which was called:
174# once (22&micro;s+6.86ms) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#5">line 5</a></div></div>use Moose;<div class="calls"><div class="calls_out"># spent 6.88ms making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#5">Text::Tradition::Directory::BEGIN@5</a>
175# spent 6.86ms making 1 call to <a href="Moose-Exporter-pm-82-line.html#402">Moose::Exporter::__ANON__[Moose/Exporter.pm:492]</a></div></div></td></tr>
176<tr><td class="h"><a name="6"></a>6</td><td class="c1">2</td><td class="c0"><span title="Avg 112&micro;s">224&micro;s</span></td><td class="c3">2</td><td class="c0">14.1ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 14.0ms (12.1+1.88) within Text::Tradition::Directory::BEGIN@6 which was called:
177# once (12.1ms+1.88ms) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#6">line 6</a></div></div>use DBI;<div class="calls"><div class="calls_out"># spent 14.0ms making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#6">Text::Tradition::Directory::BEGIN@6</a>
178# spent 30&micro;s making 1 call to <a href="Exporter-pm-8-line.html#28">Exporter::import</a></div></div></td></tr>
179<tr><td class="h"><a name="7"></a>7</td><td class="c1">2</td><td class="c0"><span title="Avg 13&micro;s">26&micro;s</span></td><td class="c3">2</td><td class="c3">68&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 39&micro;s (10+29) within Text::Tradition::Directory::BEGIN@7 which was called:
180# once (10&micro;s+29&micro;s) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#7">line 7</a></div></div>use Encode qw/ decode_utf8 /;<div class="calls"><div class="calls_out"># spent 39&micro;s making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#7">Text::Tradition::Directory::BEGIN@7</a>
181# spent 29&micro;s making 1 call to <a href="Exporter-pm-8-line.html#28">Exporter::import</a></div></div></td></tr>
182<tr><td class="h"><a name="8"></a>8</td><td class="c1">2</td><td class="c0"><span title="Avg 70&micro;s">140&micro;s</span></td><td class="c3">2</td><td class="c0">179ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 179ms (557&micro;s+179) within Text::Tradition::Directory::BEGIN@8 which was called:
183# once (557&micro;s+179ms) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#8">line 8</a></div></div>use KiokuDB::GC::Naive;<div class="calls"><div class="calls_out"># spent 179ms making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#8">Text::Tradition::Directory::BEGIN@8</a>
184# spent 2&micro;s making 1 call to <a href="UNIVERSAL-pm-738-line.html#16">UNIVERSAL::import</a></div></div></td></tr>
185<tr><td class="h"><a name="9"></a>9</td><td class="c1">2</td><td class="c0"><span title="Avg 79&micro;s">158&micro;s</span></td><td class="c3">2</td><td class="c0">62.4ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 62.4ms (1.23+61.2) within Text::Tradition::Directory::BEGIN@9 which was called:
186# once (1.23ms+61.2ms) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#9">line 9</a></div></div>use KiokuDB::TypeMap;<div class="calls"><div class="calls_out"># spent 62.4ms making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#9">Text::Tradition::Directory::BEGIN@9</a>
187# spent 2&micro;s making 1 call to <a href="UNIVERSAL-pm-738-line.html#16">UNIVERSAL::import</a></div></div></td></tr>
188<tr><td class="h"><a name="10"></a>10</td><td class="c1">2</td><td class="c0"><span title="Avg 83&micro;s">165&micro;s</span></td><td class="c3">2</td><td class="c0">60.6ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 60.6ms (473&micro;s+60.1) within Text::Tradition::Directory::BEGIN@10 which was called:
189# once (473&micro;s+60.1ms) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#10">line 10</a></div></div>use KiokuDB::TypeMap::Entry::Naive;<div class="calls"><div class="calls_out"># spent 60.6ms making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#10">Text::Tradition::Directory::BEGIN@10</a>
190# spent 2&micro;s making 1 call to <a href="UNIVERSAL-pm-738-line.html#16">UNIVERSAL::import</a></div></div></td></tr>
191<tr><td class="h"><a name="11"></a>11</td><td class="c1">2</td><td class="c0"><span title="Avg 47&micro;s">94&micro;s</span></td><td class="c3">2</td><td class="c3">18&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 17&micro;s (15+1) within Text::Tradition::Directory::BEGIN@11 which was called:
192# once (15&micro;s+1&micro;s) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#11">line 11</a></div></div>use Text::Tradition::Error;<div class="calls"><div class="calls_out"># spent 17&micro;s making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#11">Text::Tradition::Directory::BEGIN@11</a>
193# spent 1&micro;s making 1 call to <a href="UNIVERSAL-pm-738-line.html#16">UNIVERSAL::import</a></div></div></td></tr>
194<tr><td class="h"><a name="12"></a>12</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
195<tr><td class="h"><a name="13"></a>13</td><td class="c3">1</td><td class="c3"><span title="Avg 4&micro;s">4&micro;s</span></td><td class="c3">1</td><td class="c0">758ms</td><td class="s">extends 'KiokuX::Model';<div class="calls"><div class="calls_out"># spent 758ms making 1 call to <a href="Moose-pm-62-line.html#55">Moose::extends</a></div></div></td></tr>
196<tr><td class="h"><a name="14"></a>14</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
197<tr><td class="h"><a name="15"></a>15</td><td></td><td></td><td></td><td></td><td class="s">=head1 NAME</td></tr>
198<tr><td class="h"><a name="16"></a>16</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
199<tr><td class="h"><a name="17"></a>17</td><td></td><td></td><td></td><td></td><td class="s">Text::Tradition::Directory - a KiokuDB interface for storing and retrieving traditions</td></tr>
200<tr><td class="h"><a name="18"></a>18</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
201<tr><td class="h"><a name="19"></a>19</td><td></td><td></td><td></td><td></td><td class="s">=head1 SYNOPSIS</td></tr>
202<tr><td class="h"><a name="20"></a>20</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
203<tr><td class="h"><a name="21"></a>21</td><td></td><td></td><td></td><td></td><td class="s"> use Text::Tradition::Directory;</td></tr>
204<tr><td class="h"><a name="22"></a>22</td><td></td><td></td><td></td><td></td><td class="s"> my $d = Text::Tradition::Directory-&gt;new( </td></tr>
205<tr><td class="h"><a name="23"></a>23</td><td></td><td></td><td></td><td></td><td class="s"> 'dsn' =&gt; 'dbi:SQLite:mytraditions.db',</td></tr>
206<tr><td class="h"><a name="24"></a>24</td><td></td><td></td><td></td><td></td><td class="s"> 'extra_args' =&gt; { 'create' =&gt; 1 },</td></tr>
207<tr><td class="h"><a name="25"></a>25</td><td></td><td></td><td></td><td></td><td class="s"> );</td></tr>
208<tr><td class="h"><a name="26"></a>26</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
209<tr><td class="h"><a name="27"></a>27</td><td></td><td></td><td></td><td></td><td class="s"> my $tradition = Text::Tradition-&gt;new( @args );</td></tr>
210<tr><td class="h"><a name="28"></a>28</td><td></td><td></td><td></td><td></td><td class="s"> my $stemma = $tradition-&gt;add_stemma( dotfile =&gt; $dotfile ); </td></tr>
211<tr><td class="h"><a name="29"></a>29</td><td></td><td></td><td></td><td></td><td class="s"> $d-&gt;save_tradition( $tradition );</td></tr>
212<tr><td class="h"><a name="30"></a>30</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
213<tr><td class="h"><a name="31"></a>31</td><td></td><td></td><td></td><td></td><td class="s"> foreach my $id ( $d-&gt;traditions ) {</td></tr>
214<tr><td class="h"><a name="32"></a>32</td><td></td><td></td><td></td><td></td><td class="s"> print $d-&gt;tradition( $id )-&gt;name;</td></tr>
215<tr><td class="h"><a name="33"></a>33</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
216<tr><td class="h"><a name="34"></a>34</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
217<tr><td class="h"><a name="35"></a>35</td><td></td><td></td><td></td><td></td><td class="s">=head1 DESCRIPTION</td></tr>
218<tr><td class="h"><a name="36"></a>36</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
219<tr><td class="h"><a name="37"></a>37</td><td></td><td></td><td></td><td></td><td class="s">Text::Tradition::Directory is an interface for storing and retrieving text traditions and all their data, including an associated stemma hypothesis. It is an instantiation of a KiokuDB::Model, storing traditions and associated stemmas by UUID.</td></tr>
220<tr><td class="h"><a name="38"></a>38</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
221<tr><td class="h"><a name="39"></a>39</td><td></td><td></td><td></td><td></td><td class="s">=head1 METHODS</td></tr>
222<tr><td class="h"><a name="40"></a>40</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
223<tr><td class="h"><a name="41"></a>41</td><td></td><td></td><td></td><td></td><td class="s">=head2 new</td></tr>
224<tr><td class="h"><a name="42"></a>42</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
225<tr><td class="h"><a name="43"></a>43</td><td></td><td></td><td></td><td></td><td class="s">Returns a Directory object. </td></tr>
226<tr><td class="h"><a name="44"></a>44</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
227<tr><td class="h"><a name="45"></a>45</td><td></td><td></td><td></td><td></td><td class="s">=head2 traditionlist</td></tr>
228<tr><td class="h"><a name="46"></a>46</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
229<tr><td class="h"><a name="47"></a>47</td><td></td><td></td><td></td><td></td><td class="s">Returns a hashref mapping of ID =&gt; name for all traditions in the directory.</td></tr>
230<tr><td class="h"><a name="48"></a>48</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
231<tr><td class="h"><a name="49"></a>49</td><td></td><td></td><td></td><td></td><td class="s">=head2 tradition( $id )</td></tr>
232<tr><td class="h"><a name="50"></a>50</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
233<tr><td class="h"><a name="51"></a>51</td><td></td><td></td><td></td><td></td><td class="s">Returns the Text::Tradition object of the given ID.</td></tr>
234<tr><td class="h"><a name="52"></a>52</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
235<tr><td class="h"><a name="53"></a>53</td><td></td><td></td><td></td><td></td><td class="s">=head2 save( $tradition )</td></tr>
236<tr><td class="h"><a name="54"></a>54</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
237<tr><td class="h"><a name="55"></a>55</td><td></td><td></td><td></td><td></td><td class="s">Writes the given tradition to the database, returning its ID.</td></tr>
238<tr><td class="h"><a name="56"></a>56</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
239<tr><td class="h"><a name="57"></a>57</td><td></td><td></td><td></td><td></td><td class="s">=head2 delete( $tradition )</td></tr>
240<tr><td class="h"><a name="58"></a>58</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
241<tr><td class="h"><a name="59"></a>59</td><td></td><td></td><td></td><td></td><td class="s">Deletes the given tradition object from the database.</td></tr>
242<tr><td class="h"><a name="60"></a>60</td><td></td><td></td><td></td><td></td><td class="s">WARNING!! Garbage collection does not yet work. Use this sparingly.</td></tr>
243<tr><td class="h"><a name="61"></a>61</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
244<tr><td class="h"><a name="62"></a>62</td><td></td><td></td><td></td><td></td><td class="s">=begin testing</td></tr>
245<tr><td class="h"><a name="63"></a>63</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
246<tr><td class="h"><a name="64"></a>64</td><td></td><td></td><td></td><td></td><td class="s">use TryCatch;</td></tr>
247<tr><td class="h"><a name="65"></a>65</td><td></td><td></td><td></td><td></td><td class="s">use File::Temp;</td></tr>
248<tr><td class="h"><a name="66"></a>66</td><td></td><td></td><td></td><td></td><td class="s">use Text::Tradition;</td></tr>
249<tr><td class="h"><a name="67"></a>67</td><td></td><td></td><td></td><td></td><td class="s">use_ok 'Text::Tradition::Directory';</td></tr>
250<tr><td class="h"><a name="68"></a>68</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
251<tr><td class="h"><a name="69"></a>69</td><td></td><td></td><td></td><td></td><td class="s">my $fh = File::Temp-&gt;new();</td></tr>
252<tr><td class="h"><a name="70"></a>70</td><td></td><td></td><td></td><td></td><td class="s">my $file = $fh-&gt;filename;</td></tr>
253<tr><td class="h"><a name="71"></a>71</td><td></td><td></td><td></td><td></td><td class="s">$fh-&gt;close;</td></tr>
254<tr><td class="h"><a name="72"></a>72</td><td></td><td></td><td></td><td></td><td class="s">my $dsn = &quot;dbi:SQLite:dbname=$file&quot;;</td></tr>
255<tr><td class="h"><a name="73"></a>73</td><td></td><td></td><td></td><td></td><td class="s">my $uuid;</td></tr>
256<tr><td class="h"><a name="74"></a>74</td><td></td><td></td><td></td><td></td><td class="s">my $t = Text::Tradition-&gt;new( </td></tr>
257<tr><td class="h"><a name="75"></a>75</td><td></td><td></td><td></td><td></td><td class="s"> 'name' =&gt; 'inline', </td></tr>
258<tr><td class="h"><a name="76"></a>76</td><td></td><td></td><td></td><td></td><td class="s"> 'input' =&gt; 'Tabular',</td></tr>
259<tr><td class="h"><a name="77"></a>77</td><td></td><td></td><td></td><td></td><td class="s"> 'file' =&gt; 't/data/simple.txt',</td></tr>
260<tr><td class="h"><a name="78"></a>78</td><td></td><td></td><td></td><td></td><td class="s"> );</td></tr>
261<tr><td class="h"><a name="79"></a>79</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
262<tr><td class="h"><a name="80"></a>80</td><td></td><td></td><td></td><td></td><td class="s">{</td></tr>
263<tr><td class="h"><a name="81"></a>81</td><td></td><td></td><td></td><td></td><td class="s"> my $d = Text::Tradition::Directory-&gt;new( 'dsn' =&gt; $dsn,</td></tr>
264<tr><td class="h"><a name="82"></a>82</td><td></td><td></td><td></td><td></td><td class="s"> 'extra_args' =&gt; { 'create' =&gt; 1 } );</td></tr>
265<tr><td class="h"><a name="83"></a>83</td><td></td><td></td><td></td><td></td><td class="s"> is( ref $d, 'Text::Tradition::Directory', &quot;Got directory object&quot; );</td></tr>
266<tr><td class="h"><a name="84"></a>84</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
267<tr><td class="h"><a name="85"></a>85</td><td></td><td></td><td></td><td></td><td class="s"> my $scope = $d-&gt;new_scope;</td></tr>
268<tr><td class="h"><a name="86"></a>86</td><td></td><td></td><td></td><td></td><td class="s"> $uuid = $d-&gt;save( $t );</td></tr>
269<tr><td class="h"><a name="87"></a>87</td><td></td><td></td><td></td><td></td><td class="s"> ok( $uuid, &quot;Saved test tradition&quot; );</td></tr>
270<tr><td class="h"><a name="88"></a>88</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
271<tr><td class="h"><a name="89"></a>89</td><td></td><td></td><td></td><td></td><td class="s"> my $s = $t-&gt;add_stemma( dotfile =&gt; 't/data/simple.dot' );</td></tr>
272<tr><td class="h"><a name="90"></a>90</td><td></td><td></td><td></td><td></td><td class="s"> ok( $d-&gt;save( $t ), &quot;Updated tradition with stemma&quot; );</td></tr>
273<tr><td class="h"><a name="91"></a>91</td><td></td><td></td><td></td><td></td><td class="s"> is( $d-&gt;tradition( $uuid ), $t, &quot;Correct tradition returned for id&quot; );</td></tr>
274<tr><td class="h"><a name="92"></a>92</td><td></td><td></td><td></td><td></td><td class="s"> is( $d-&gt;tradition( $uuid )-&gt;stemma(0), $s, &quot;...and it has the correct stemma&quot; );</td></tr>
275<tr><td class="h"><a name="93"></a>93</td><td></td><td></td><td></td><td></td><td class="s"> try {</td></tr>
276<tr><td class="h"><a name="94"></a>94</td><td></td><td></td><td></td><td></td><td class="s"> $d-&gt;save( $s );</td></tr>
277<tr><td class="h"><a name="95"></a>95</td><td></td><td></td><td></td><td></td><td class="s"> } catch( Text::Tradition::Error $e ) {</td></tr>
278<tr><td class="h"><a name="96"></a>96</td><td></td><td></td><td></td><td></td><td class="s"> is( $e-&gt;ident, 'database error', &quot;Got exception trying to save stemma directly&quot; );</td></tr>
279<tr><td class="h"><a name="97"></a>97</td><td></td><td></td><td></td><td></td><td class="s"> like( $e-&gt;message, qr/Cannot directly save non-Tradition object/, </td></tr>
280<tr><td class="h"><a name="98"></a>98</td><td></td><td></td><td></td><td></td><td class="s"> &quot;Exception has correct message&quot; );</td></tr>
281<tr><td class="h"><a name="99"></a>99</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
282<tr><td class="h"><a name="100"></a>100</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
283<tr><td class="h"><a name="101"></a>101</td><td></td><td></td><td></td><td></td><td class="s">my $nt = Text::Tradition-&gt;new(</td></tr>
284<tr><td class="h"><a name="102"></a>102</td><td></td><td></td><td></td><td></td><td class="s"> 'name' =&gt; 'CX',</td></tr>
285<tr><td class="h"><a name="103"></a>103</td><td></td><td></td><td></td><td></td><td class="s"> 'input' =&gt; 'CollateX',</td></tr>
286<tr><td class="h"><a name="104"></a>104</td><td></td><td></td><td></td><td></td><td class="s"> 'file' =&gt; 't/data/Collatex-16.xml',</td></tr>
287<tr><td class="h"><a name="105"></a>105</td><td></td><td></td><td></td><td></td><td class="s"> );</td></tr>
288<tr><td class="h"><a name="106"></a>106</td><td></td><td></td><td></td><td></td><td class="s">is( ref( $nt ), 'Text::Tradition', &quot;Made new tradition&quot; );</td></tr>
289<tr><td class="h"><a name="107"></a>107</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
290<tr><td class="h"><a name="108"></a>108</td><td></td><td></td><td></td><td></td><td class="s">{</td></tr>
291<tr><td class="h"><a name="109"></a>109</td><td></td><td></td><td></td><td></td><td class="s"> my $f = Text::Tradition::Directory-&gt;new( 'dsn' =&gt; $dsn );</td></tr>
292<tr><td class="h"><a name="110"></a>110</td><td></td><td></td><td></td><td></td><td class="s"> my $scope = $f-&gt;new_scope;</td></tr>
293<tr><td class="h"><a name="111"></a>111</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $f-&gt;traditionlist, 1, &quot;Directory index has our tradition&quot; );</td></tr>
294<tr><td class="h"><a name="112"></a>112</td><td></td><td></td><td></td><td></td><td class="s"> my $nuuid = $f-&gt;save( $nt );</td></tr>
295<tr><td class="h"><a name="113"></a>113</td><td></td><td></td><td></td><td></td><td class="s"> ok( $nuuid, &quot;Stored second tradition&quot; );</td></tr>
296<tr><td class="h"><a name="114"></a>114</td><td></td><td></td><td></td><td></td><td class="s"> my @tlist = $f-&gt;traditionlist;</td></tr>
297<tr><td class="h"><a name="115"></a>115</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar @tlist, 2, &quot;Directory index has both traditions&quot; );</td></tr>
298<tr><td class="h"><a name="116"></a>116</td><td></td><td></td><td></td><td></td><td class="s"> my $tf = $f-&gt;tradition( $uuid );</td></tr>
299<tr><td class="h"><a name="117"></a>117</td><td></td><td></td><td></td><td></td><td class="s"> my( $tlobj ) = grep { $_-&gt;{'id'} eq $uuid } @tlist;</td></tr>
300<tr><td class="h"><a name="118"></a>118</td><td></td><td></td><td></td><td></td><td class="s"> is( $tlobj-&gt;{'name'}, $tf-&gt;name, &quot;Directory index has correct tradition name&quot; );</td></tr>
301<tr><td class="h"><a name="119"></a>119</td><td></td><td></td><td></td><td></td><td class="s"> is( $tf-&gt;name, $t-&gt;name, &quot;Retrieved the tradition from a new directory&quot; );</td></tr>
302<tr><td class="h"><a name="120"></a>120</td><td></td><td></td><td></td><td></td><td class="s"> my $sid = $f-&gt;object_to_id( $tf-&gt;stemma(0) );</td></tr>
303<tr><td class="h"><a name="121"></a>121</td><td></td><td></td><td></td><td></td><td class="s"> try {</td></tr>
304<tr><td class="h"><a name="122"></a>122</td><td></td><td></td><td></td><td></td><td class="s"> $f-&gt;tradition( $sid );</td></tr>
305<tr><td class="h"><a name="123"></a>123</td><td></td><td></td><td></td><td></td><td class="s"> } catch( Text::Tradition::Error $e ) {</td></tr>
306<tr><td class="h"><a name="124"></a>124</td><td></td><td></td><td></td><td></td><td class="s"> is( $e-&gt;ident, 'database error', &quot;Got exception trying to fetch stemma directly&quot; );</td></tr>
307<tr><td class="h"><a name="125"></a>125</td><td></td><td></td><td></td><td></td><td class="s"> like( $e-&gt;message, qr/not a Text::Tradition/, &quot;Exception has correct message&quot; );</td></tr>
308<tr><td class="h"><a name="126"></a>126</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
309<tr><td class="h"><a name="127"></a>127</td><td></td><td></td><td></td><td></td><td class="s"> try {</td></tr>
310<tr><td class="h"><a name="128"></a>128</td><td></td><td></td><td></td><td></td><td class="s"> $f-&gt;delete( $sid );</td></tr>
311<tr><td class="h"><a name="129"></a>129</td><td></td><td></td><td></td><td></td><td class="s"> } catch( Text::Tradition::Error $e ) {</td></tr>
312<tr><td class="h"><a name="130"></a>130</td><td></td><td></td><td></td><td></td><td class="s"> is( $e-&gt;ident, 'database error', &quot;Got exception trying to delete stemma directly&quot; );</td></tr>
313<tr><td class="h"><a name="131"></a>131</td><td></td><td></td><td></td><td></td><td class="s"> like( $e-&gt;message, qr/Cannot directly delete non-Tradition object/, </td></tr>
314<tr><td class="h"><a name="132"></a>132</td><td></td><td></td><td></td><td></td><td class="s"> &quot;Exception has correct message&quot; );</td></tr>
315<tr><td class="h"><a name="133"></a>133</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
316<tr><td class="h"><a name="134"></a>134</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
317<tr><td class="h"><a name="135"></a>135</td><td></td><td></td><td></td><td></td><td class="s"> $f-&gt;delete( $uuid );</td></tr>
318<tr><td class="h"><a name="136"></a>136</td><td></td><td></td><td></td><td></td><td class="s"> ok( !$f-&gt;exists( $uuid ), &quot;Object is deleted from DB&quot; );</td></tr>
319<tr><td class="h"><a name="137"></a>137</td><td></td><td></td><td></td><td></td><td class="s"> ok( !$f-&gt;exists( $sid ), &quot;Object stemma also deleted from DB&quot; );</td></tr>
320<tr><td class="h"><a name="138"></a>138</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $f-&gt;traditionlist, 1, &quot;Object is deleted from index&quot; );</td></tr>
321<tr><td class="h"><a name="139"></a>139</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
322<tr><td class="h"><a name="140"></a>140</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
323<tr><td class="h"><a name="141"></a>141</td><td></td><td></td><td></td><td></td><td class="s">{</td></tr>
324<tr><td class="h"><a name="142"></a>142</td><td></td><td></td><td></td><td></td><td class="s"> my $g = Text::Tradition::Directory-&gt;new( 'dsn' =&gt; $dsn );</td></tr>
325<tr><td class="h"><a name="143"></a>143</td><td></td><td></td><td></td><td></td><td class="s"> my $scope = $g-&gt;new_scope;</td></tr>
326<tr><td class="h"><a name="144"></a>144</td><td></td><td></td><td></td><td></td><td class="s"> is( scalar $g-&gt;traditionlist, 1, &quot;Now one object in new directory index&quot; );</td></tr>
327<tr><td class="h"><a name="145"></a>145</td><td></td><td></td><td></td><td></td><td class="s"> my $ntobj = $g-&gt;tradition( 'CX' );</td></tr>
328<tr><td class="h"><a name="146"></a>146</td><td></td><td></td><td></td><td></td><td class="s"> my @w1 = sort { $a-&gt;sigil cmp $b-&gt;sigil } $ntobj-&gt;witnesses;</td></tr>
329<tr><td class="h"><a name="147"></a>147</td><td></td><td></td><td></td><td></td><td class="s"> my @w2 = sort{ $a-&gt;sigil cmp $b-&gt;sigil } $nt-&gt;witnesses;</td></tr>
330<tr><td class="h"><a name="148"></a>148</td><td></td><td></td><td></td><td></td><td class="s"> is_deeply( \@w1, \@w2, &quot;Looked up remaining tradition by name&quot; );</td></tr>
331<tr><td class="h"><a name="149"></a>149</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
332<tr><td class="h"><a name="150"></a>150</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
333<tr><td class="h"><a name="151"></a>151</td><td></td><td></td><td></td><td></td><td class="s">=end testing</td></tr>
334<tr><td class="h"><a name="152"></a>152</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
335<tr><td class="h"><a name="153"></a>153</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
336<tr><td class="h"><a name="154"></a>154</td><td class="c1">2</td><td class="c0"><span title="Avg 432&micro;s">864&micro;s</span></td><td class="c3">2</td><td class="c0">15.5ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 15.5ms (439&micro;s+15.0) within Text::Tradition::Directory::BEGIN@154 which was called:
337# once (439&micro;s+15.0ms) by main::BEGIN@11 at <a href="lib-Text-Tradition-Directory-pm-1356-line.html#154">line 154</a></div></div>use Text::Tradition::TypeMap::Entry;<div class="calls"><div class="calls_out"># spent 15.5ms making 1 call to <a href="lib-Text-Tradition-Directory-pm-1356-line.html#154">Text::Tradition::Directory::BEGIN@154</a>
338# spent 2&micro;s making 1 call to <a href="UNIVERSAL-pm-738-line.html#16">UNIVERSAL::import</a></div></div></td></tr>
339<tr><td class="h"><a name="155"></a>155</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
340<tr><td class="h"><a name="156"></a>156</td><td></td><td></td><td></td><td></td><td class="s">has +typemap =&gt; (</td></tr>
341<tr><td class="h"><a name="157"></a>157</td><td></td><td></td><td></td><td></td><td class="s"> is =&gt; 'rw',</td></tr>
342<tr><td class="h"><a name="158"></a>158</td><td></td><td></td><td></td><td></td><td class="s"> isa =&gt; 'KiokuDB::TypeMap',</td></tr>
343<tr><td class="h"><a name="159"></a>159</td><td></td><td></td><td></td><td></td><td class="s"><div class="calls"><div class="calls_in"># spent 189&micro;s (29+160) within Text::Tradition::Directory::__ANON__[lib/Text/Tradition/Directory.pm:168] which was called:
344# once (29&micro;s+160&micro;s) by Class::MOP::Mixin::AttributeCore::default at <a href="Class-MOP-Mixin-AttributeCore-pm-86-line.html#45">line 45 of Class/MOP/Mixin/AttributeCore.pm</a></div></div> default =&gt; sub {</td></tr>
345<tr><td class="h"><a name="160"></a>160</td><td class="c3">1</td><td class="c0"><span title="Avg 23&micro;s">23&micro;s</span></td><td class="c0">4</td><td class="c3">160&micro;s</td><td class="s"> KiokuDB::TypeMap-&gt;new(<div class="calls"><div class="calls_out"> # spent 94&micro;s making 1 call to <a href="Class-MOP-Package-pm-122-line.html#221">KiokuDB::TypeMap::new</a>
346 # spent 45&micro;s making 2 calls to <a href="Class-MOP-Package-pm-122-line.html#221">Text::Tradition::TypeMap::Entry::new</a>, avg 22&micro;s/call
347 # spent 20&micro;s making 1 call to <a href="Class-MOP-Package-pm-122-line.html#221">KiokuDB::TypeMap::Entry::Naive::new</a></div></div></td></tr>
348<tr><td class="h"><a name="161"></a>161</td><td></td><td></td><td></td><td></td><td class="s"> isa_entries =&gt; {</td></tr>
349<tr><td class="h"><a name="162"></a>162</td><td></td><td></td><td></td><td></td><td class="s"> &quot;Text::Tradition&quot; =&gt;</td></tr>
350<tr><td class="h"><a name="163"></a>163</td><td></td><td></td><td></td><td></td><td class="s"> KiokuDB::TypeMap::Entry::Naive-&gt;new(),</td></tr>
351<tr><td class="h"><a name="164"></a>164</td><td></td><td></td><td></td><td></td><td class="s"> &quot;Graph&quot; =&gt; Text::Tradition::TypeMap::Entry-&gt;new(),</td></tr>
352<tr><td class="h"><a name="165"></a>165</td><td></td><td></td><td></td><td></td><td class="s"> &quot;Graph::AdjacencyMap&quot; =&gt; Text::Tradition::TypeMap::Entry-&gt;new()</td></tr>
353<tr><td class="h"><a name="166"></a>166</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
354<tr><td class="h"><a name="167"></a>167</td><td></td><td></td><td></td><td></td><td class="s"> );</td></tr>
355<tr><td class="h"><a name="168"></a>168</td><td></td><td></td><td></td><td></td><td class="s"> },</td></tr>
356<tr><td class="h"><a name="169"></a>169</td><td class="c3">1</td><td class="c3"><span title="Avg 6&micro;s">6&micro;s</span></td><td class="c3">1</td><td class="c1">2.41ms</td><td class="s">);<div class="calls"><div class="calls_out"># spent 2.41ms making 1 call to <a href="Moose-pm-62-line.html#70">Moose::has</a></div></div></td></tr>
357<tr><td class="h"><a name="170"></a>170</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
358<tr><td class="h"><a name="171"></a>171</td><td></td><td></td><td></td><td></td><td class="s"># Push some columns into the extra_args</td></tr>
359<tr><td class="h"><a name="172"></a>172</td><td></td><td></td><td></td><td></td><td class="s">around BUILDARGS =&gt; sub {</td></tr>
360<tr><td class="h"><a name="173"></a>173</td><td class="c3">1</td><td class="c3"><span title="Avg 400ns">400ns</span></td><td></td><td></td><td class="s"> my $orig = shift;</td></tr>
361<tr><td class="h"><a name="174"></a>174</td><td class="c3">1</td><td class="c3"><span title="Avg 600ns">600ns</span></td><td></td><td></td><td class="s"> my $class = shift;</td></tr>
362<tr><td class="h"><a name="175"></a>175</td><td class="c3">1</td><td class="c3"><span title="Avg 200ns">200ns</span></td><td></td><td></td><td class="s"> my $args;</td></tr>
363<tr><td class="h"><a name="176"></a>176</td><td class="c3">1</td><td class="c3"><span title="Avg 900ns">900ns</span></td><td></td><td></td><td class="s"> if( @_ == 1 ) {</td></tr>
364<tr><td class="h"><a name="177"></a>177</td><td></td><td></td><td></td><td></td><td class="s"> $args = $_[0];</td></tr>
365<tr><td class="h"><a name="178"></a>178</td><td></td><td></td><td></td><td></td><td class="s"> } else {</td></tr>
366<tr><td class="h"><a name="179"></a>179</td><td class="c3">1</td><td class="c3"><span title="Avg 1&micro;s">1&micro;s</span></td><td></td><td></td><td class="s"> $args = { @_ };</td></tr>
367<tr><td class="h"><a name="180"></a>180</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
368<tr><td class="h"><a name="181"></a>181</td><td class="c3">1</td><td class="c3"><span title="Avg 7&micro;s">7&micro;s</span></td><td class="c3">1</td><td class="c3">2&micro;s</td><td class="s"> if( $args-&gt;{'dsn'} =~ /^dbi/ ) { # We're using Backend::DBI<div class="calls"><div class="calls_out"> # spent 2&micro;s making 1 call to <a href="Class-MOP-Package-pm-122-line.html#Text__Tradition__Directory__CORE_match">Text::Tradition::Directory::CORE:match</a></div></div></td></tr>
369<tr><td class="h"><a name="182"></a>182</td><td class="c3">1</td><td class="c3"><span title="Avg 4&micro;s">4&micro;s</span></td><td></td><td></td><td class="s"> my @column_args = ( 'columns',</td></tr>
370<tr><td class="h"><a name="183"></a>183</td><td></td><td></td><td></td><td></td><td class="s"> [ 'name' =&gt; { 'data_type' =&gt; 'varchar', 'is_nullable' =&gt; 1 } ] );</td></tr>
371<tr><td class="h"><a name="184"></a>184</td><td class="c3">1</td><td class="c3"><span title="Avg 600ns">600ns</span></td><td></td><td></td><td class="s"> my $ea = $args-&gt;{'extra_args'};</td></tr>
372<tr><td class="h"><a name="185"></a>185</td><td class="c3">1</td><td class="c3"><span title="Avg 900ns">900ns</span></td><td></td><td></td><td class="s"> if( ref( $ea ) eq 'ARRAY' ) {</td></tr>
373<tr><td class="h"><a name="186"></a>186</td><td></td><td></td><td></td><td></td><td class="s"> push( @$ea, @column_args );</td></tr>
374<tr><td class="h"><a name="187"></a>187</td><td></td><td></td><td></td><td></td><td class="s"> } elsif( ref( $ea ) eq 'HASH' ) {</td></tr>
375<tr><td class="h"><a name="188"></a>188</td><td></td><td></td><td></td><td></td><td class="s"> $ea = { %$ea, @column_args };</td></tr>
376<tr><td class="h"><a name="189"></a>189</td><td></td><td></td><td></td><td></td><td class="s"> } else {</td></tr>
377<tr><td class="h"><a name="190"></a>190</td><td class="c3">1</td><td class="c3"><span title="Avg 1&micro;s">1&micro;s</span></td><td></td><td></td><td class="s"> $ea = { @column_args };</td></tr>
378<tr><td class="h"><a name="191"></a>191</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
379<tr><td class="h"><a name="192"></a>192</td><td class="c3">1</td><td class="c3"><span title="Avg 1&micro;s">1&micro;s</span></td><td></td><td></td><td class="s"> $args-&gt;{'extra_args'} = $ea;</td></tr>
380<tr><td class="h"><a name="193"></a>193</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
381<tr><td class="h"><a name="194"></a>194</td><td class="c3">1</td><td class="c3"><span title="Avg 4&micro;s">4&micro;s</span></td><td class="c3">1</td><td class="c3">6&micro;s</td><td class="s"> return $class-&gt;$orig( $args );<div class="calls"><div class="calls_out"> # spent 6&micro;s making 1 call to <a href="Moose-Object-pm-266-line.html#31">Moose::Object::BUILDARGS</a></div></div></td></tr>
382<tr><td class="h"><a name="195"></a>195</td><td class="c3">1</td><td class="c3"><span title="Avg 6&micro;s">6&micro;s</span></td><td class="c3">1</td><td class="c3">491&micro;s</td><td class="s">};<div class="calls"><div class="calls_out"># spent 491&micro;s making 1 call to <a href="Moose-pm-62-line.html#90">Moose::around</a></div></div></td></tr>
383<tr><td class="h"><a name="196"></a>196</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
384<tr><td class="h"><a name="197"></a>197</td><td></td><td></td><td></td><td></td><td class="s">before [ qw/ store update insert delete / ] =&gt; sub {</td></tr>
385<tr><td class="h"><a name="198"></a>198</td><td class="c1">2</td><td class="c3"><span title="Avg 600ns">1&micro;s</span></td><td></td><td></td><td class="s"> my $self = shift;</td></tr>
386<tr><td class="h"><a name="199"></a>199</td><td class="c1">2</td><td class="c3"><span title="Avg 600ns">1&micro;s</span></td><td></td><td></td><td class="s"> my @nontrad;</td></tr>
387<tr><td class="h"><a name="200"></a>200</td><td class="c1">2</td><td class="c3"><span title="Avg 4&micro;s">8&micro;s</span></td><td></td><td></td><td class="s"> foreach my $obj ( @_ ) {</td></tr>
388<tr><td class="h"><a name="201"></a>201</td><td class="c1">2</td><td class="c0"><span title="Avg 13&micro;s">26&micro;s</span></td><td></td><td></td><td class="s"> if( ref( $obj ) &amp;&amp; ref( $obj ) ne 'Text::Tradition' ) {</td></tr>
389<tr><td class="h"><a name="202"></a>202</td><td></td><td></td><td></td><td></td><td class="s"> # Is it an id =&gt; Tradition hash?</td></tr>
390<tr><td class="h"><a name="203"></a>203</td><td></td><td></td><td></td><td></td><td class="s"> if( ref( $obj ) eq 'HASH' &amp;&amp; keys( %$obj ) == 1 ) {</td></tr>
391<tr><td class="h"><a name="204"></a>204</td><td></td><td></td><td></td><td></td><td class="s"> my( $k ) = keys %$obj;</td></tr>
392<tr><td class="h"><a name="205"></a>205</td><td></td><td></td><td></td><td></td><td class="s"> next if ref( $obj-&gt;{$k} ) eq 'Text::Tradition';</td></tr>
393<tr><td class="h"><a name="206"></a>206</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
394<tr><td class="h"><a name="207"></a>207</td><td></td><td></td><td></td><td></td><td class="s"> push( @nontrad, $obj );</td></tr>
395<tr><td class="h"><a name="208"></a>208</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
396<tr><td class="h"><a name="209"></a>209</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
397<tr><td class="h"><a name="210"></a>210</td><td class="c1">2</td><td class="c0"><span title="Avg 12&micro;s">24&micro;s</span></td><td></td><td></td><td class="s"> if( @nontrad ) {</td></tr>
398<tr><td class="h"><a name="211"></a>211</td><td></td><td></td><td></td><td></td><td class="s"> throw( &quot;Cannot directly save non-Tradition object of type &quot;</td></tr>
399<tr><td class="h"><a name="212"></a>212</td><td></td><td></td><td></td><td></td><td class="s"> . ref( $nontrad[0] ) );</td></tr>
400<tr><td class="h"><a name="213"></a>213</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
401<tr><td class="h"><a name="214"></a>214</td><td class="c3">1</td><td class="c3"><span title="Avg 8&micro;s">8&micro;s</span></td><td class="c3">1</td><td class="c3">884&micro;s</td><td class="s">};<div class="calls"><div class="calls_out"># spent 884&micro;s making 1 call to <a href="Moose-pm-62-line.html#82">Moose::before</a></div></div></td></tr>
402<tr><td class="h"><a name="215"></a>215</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
403<tr><td class="h"><a name="216"></a>216</td><td></td><td></td><td></td><td></td><td class="s"># TODO Garbage collection doesn't work. Suck it up and live with the </td></tr>
404<tr><td class="h"><a name="217"></a>217</td><td></td><td></td><td></td><td></td><td class="s"># inflated DB.</td></tr>
405<tr><td class="h"><a name="218"></a>218</td><td></td><td></td><td></td><td></td><td class="s"># after delete =&gt; sub {</td></tr>
406<tr><td class="h"><a name="219"></a>219</td><td></td><td></td><td></td><td></td><td class="s"># my $self = shift;</td></tr>
407<tr><td class="h"><a name="220"></a>220</td><td></td><td></td><td></td><td></td><td class="s"># my $gc = KiokuDB::GC::Naive-&gt;new( backend =&gt; $self-&gt;directory-&gt;backend );</td></tr>
408<tr><td class="h"><a name="221"></a>221</td><td></td><td></td><td></td><td></td><td class="s"># $self-&gt;directory-&gt;backend-&gt;delete( $gc-&gt;garbage-&gt;members );</td></tr>
409<tr><td class="h"><a name="222"></a>222</td><td></td><td></td><td></td><td></td><td class="s"># };</td></tr>
410<tr><td class="h"><a name="223"></a>223</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
411<tr><td class="h"><a name="224"></a>224</td><td></td><td></td><td></td><td></td><td class="s"><div class="calls"><div class="calls_in"># spent 8.22s (42&micro;s+8.22) within Text::Tradition::Directory::save which was called 2 times, avg 4.11s/call:
412# once (35&micro;s+4.42s) by stemmaweb::Controller::Root::variantgraph at <a href="lib-stemmaweb-Controller-Root-pm-2077-line.html#72">line 72 of lib/stemmaweb/Controller/Root.pm</a>
413# once (8&micro;s+3.79s) by main::RUNTIME at <a href="script-nytprof-pl-1-line.html#31">line 31 of script/nytprof.pl</a></div></div>sub save {</td></tr>
414<tr><td class="h"><a name="225"></a>225</td><td class="c1">2</td><td class="c3"><span title="Avg 3&micro;s">6&micro;s</span></td><td></td><td></td><td class="s"> my $self = shift;</td></tr>
415<tr><td class="h"><a name="226"></a>226</td><td class="c1">2</td><td class="c0"><span title="Avg 22&micro;s">43&micro;s</span></td><td class="c3">2</td><td class="c0">8.22s</td><td class="s"> return $self-&gt;store( @_ );<div class="calls"><div class="calls_out"> # spent 8.22s making 2 calls to <a href="Class-MOP-Package-pm-122-line.html#221">Text::Tradition::Directory::store</a>, avg 4.11s/call</div></div></td></tr>
416<tr><td class="h"><a name="227"></a>227</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
417<tr><td class="h"><a name="228"></a>228</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
418<tr><td class="h"><a name="229"></a>229</td><td></td><td></td><td></td><td></td><td class="s"><div class="calls"><div class="calls_in"># spent 405&micro;s (18+387) within Text::Tradition::Directory::tradition which was called:
419# once (18&micro;s+387&micro;s) by stemmaweb::Controller::Root::variantgraph at <a href="lib-stemmaweb-Controller-Root-pm-2077-line.html#68">line 68 of lib/stemmaweb/Controller/Root.pm</a></div></div>sub tradition {</td></tr>
420<tr><td class="h"><a name="230"></a>230</td><td class="c3">1</td><td class="c3"><span title="Avg 900ns">900ns</span></td><td></td><td></td><td class="s"> my( $self, $id ) = @_;</td></tr>
421<tr><td class="h"><a name="231"></a>231</td><td class="c3">1</td><td class="c2"><span title="Avg 11&micro;s">11&micro;s</span></td><td class="c3">1</td><td class="c3">387&micro;s</td><td class="s"> my $obj = $self-&gt;lookup( $id );<div class="calls"><div class="calls_out"> # spent 387&micro;s making 1 call to <a href="Class-MOP-Package-pm-122-line.html#221">KiokuX::Model::lookup</a></div></div></td></tr>
422<tr><td class="h"><a name="232"></a>232</td><td class="c3">1</td><td class="c3"><span title="Avg 300ns">300ns</span></td><td></td><td></td><td class="s"> unless( $obj ) {</td></tr>
423<tr><td class="h"><a name="233"></a>233</td><td></td><td></td><td></td><td></td><td class="s"> # Try looking up by name.</td></tr>
424<tr><td class="h"><a name="234"></a>234</td><td></td><td></td><td></td><td></td><td class="s"> foreach my $item ( $self-&gt;traditionlist ) {</td></tr>
425<tr><td class="h"><a name="235"></a>235</td><td></td><td></td><td></td><td></td><td class="s"> if( $item-&gt;{'name'} eq $id ) {</td></tr>
426<tr><td class="h"><a name="236"></a>236</td><td></td><td></td><td></td><td></td><td class="s"> $obj = $self-&gt;lookup( $item-&gt;{'id'} );</td></tr>
427<tr><td class="h"><a name="237"></a>237</td><td></td><td></td><td></td><td></td><td class="s"> last;</td></tr>
428<tr><td class="h"><a name="238"></a>238</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
429<tr><td class="h"><a name="239"></a>239</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
430<tr><td class="h"><a name="240"></a>240</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
431<tr><td class="h"><a name="241"></a>241</td><td class="c3">1</td><td class="c3"><span title="Avg 2&micro;s">2&micro;s</span></td><td></td><td></td><td class="s"> if( $obj &amp;&amp; ref( $obj ) ne 'Text::Tradition' ) {</td></tr>
432<tr><td class="h"><a name="242"></a>242</td><td></td><td></td><td></td><td></td><td class="s"> throw( &quot;Retrieved object is a &quot; . ref( $obj ) . &quot;, not a Text::Tradition&quot; );</td></tr>
433<tr><td class="h"><a name="243"></a>243</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
434<tr><td class="h"><a name="244"></a>244</td><td class="c3">1</td><td class="c3"><span title="Avg 4&micro;s">4&micro;s</span></td><td></td><td></td><td class="s"> return $obj;</td></tr>
435<tr><td class="h"><a name="245"></a>245</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
436<tr><td class="h"><a name="246"></a>246</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
437<tr><td class="h"><a name="247"></a>247</td><td></td><td></td><td></td><td></td><td class="s">sub traditionlist {</td></tr>
438<tr><td class="h"><a name="248"></a>248</td><td></td><td></td><td></td><td></td><td class="s"> my $self = shift;</td></tr>
439<tr><td class="h"><a name="249"></a>249</td><td></td><td></td><td></td><td></td><td class="s"> # If we are using DBI, we can do it the easy way; if not, the hard way.</td></tr>
440<tr><td class="h"><a name="250"></a>250</td><td></td><td></td><td></td><td></td><td class="s"> # Easy way still involves making a separate DBI connection. Ew.</td></tr>
441<tr><td class="h"><a name="251"></a>251</td><td></td><td></td><td></td><td></td><td class="s"> my @tlist;</td></tr>
442<tr><td class="h"><a name="252"></a>252</td><td></td><td></td><td></td><td></td><td class="s"> if( $self-&gt;dsn =~ /^dbi:(\w+):/ ) {</td></tr>
443<tr><td class="h"><a name="253"></a>253</td><td></td><td></td><td></td><td></td><td class="s"> my $dbtype = $1;</td></tr>
444<tr><td class="h"><a name="254"></a>254</td><td></td><td></td><td></td><td></td><td class="s"> my @connection = @{$self-&gt;directory-&gt;backend-&gt;connect_info};</td></tr>
445<tr><td class="h"><a name="255"></a>255</td><td></td><td></td><td></td><td></td><td class="s"> # Get rid of KiokuDB-specific arg</td></tr>
446<tr><td class="h"><a name="256"></a>256</td><td></td><td></td><td></td><td></td><td class="s"> pop @connection if scalar @connection &gt; 4;</td></tr>
447<tr><td class="h"><a name="257"></a>257</td><td></td><td></td><td></td><td></td><td class="s"> $connection[3]-&gt;{'sqlite_unicode'} = 1 if $dbtype eq 'SQLite';</td></tr>
448<tr><td class="h"><a name="258"></a>258</td><td></td><td></td><td></td><td></td><td class="s"> $connection[3]-&gt;{'pg_enable_utf8'} = 1 if $dbtype eq 'Pg';</td></tr>
449<tr><td class="h"><a name="259"></a>259</td><td></td><td></td><td></td><td></td><td class="s"> my $dbh = DBI-&gt;connect( @connection );</td></tr>
450<tr><td class="h"><a name="260"></a>260</td><td></td><td></td><td></td><td></td><td class="s"> my $q = $dbh-&gt;prepare( 'SELECT id, name from entries WHERE class = &quot;Text::Tradition&quot;' );</td></tr>
451<tr><td class="h"><a name="261"></a>261</td><td></td><td></td><td></td><td></td><td class="s"> $q-&gt;execute();</td></tr>
452<tr><td class="h"><a name="262"></a>262</td><td></td><td></td><td></td><td></td><td class="s"> while( my @row = $q-&gt;fetchrow_array ) {</td></tr>
453<tr><td class="h"><a name="263"></a>263</td><td></td><td></td><td></td><td></td><td class="s"> my( $id, $name ) = @row;</td></tr>
454<tr><td class="h"><a name="264"></a>264</td><td></td><td></td><td></td><td></td><td class="s"> # Horrible horrible hack</td></tr>
455<tr><td class="h"><a name="265"></a>265</td><td></td><td></td><td></td><td></td><td class="s"> $name = decode_utf8( $name ) if $dbtype eq 'mysql';</td></tr>
456<tr><td class="h"><a name="266"></a>266</td><td></td><td></td><td></td><td></td><td class="s"> push( @tlist, { 'id' =&gt; $row[0], 'name' =&gt; $row[1] } );</td></tr>
457<tr><td class="h"><a name="267"></a>267</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
458<tr><td class="h"><a name="268"></a>268</td><td></td><td></td><td></td><td></td><td class="s"> } else {</td></tr>
459<tr><td class="h"><a name="269"></a>269</td><td></td><td></td><td></td><td></td><td class="s"> $self-&gt;scan( sub { my $o = shift; </td></tr>
460<tr><td class="h"><a name="270"></a>270</td><td></td><td></td><td></td><td></td><td class="s"> push( @tlist, { 'id' =&gt; $self-&gt;object_to_id( $o ), </td></tr>
461<tr><td class="h"><a name="271"></a>271</td><td></td><td></td><td></td><td></td><td class="s"> 'name' =&gt; $o-&gt;name } ) } );</td></tr>
462<tr><td class="h"><a name="272"></a>272</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
463<tr><td class="h"><a name="273"></a>273</td><td></td><td></td><td></td><td></td><td class="s"> return @tlist;</td></tr>
464<tr><td class="h"><a name="274"></a>274</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
465<tr><td class="h"><a name="275"></a>275</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
466<tr><td class="h"><a name="276"></a>276</td><td></td><td></td><td></td><td></td><td class="s">sub throw {</td></tr>
467<tr><td class="h"><a name="277"></a>277</td><td></td><td></td><td></td><td></td><td class="s"> Text::Tradition::Error-&gt;throw( </td></tr>
468<tr><td class="h"><a name="278"></a>278</td><td></td><td></td><td></td><td></td><td class="s"> 'ident' =&gt; 'database error',</td></tr>
469<tr><td class="h"><a name="279"></a>279</td><td></td><td></td><td></td><td></td><td class="s"> 'message' =&gt; $_[0],</td></tr>
470<tr><td class="h"><a name="280"></a>280</td><td></td><td></td><td></td><td></td><td class="s"> );</td></tr>
471<tr><td class="h"><a name="281"></a>281</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
472<tr><td class="h"><a name="282"></a>282</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
473<tr><td class="h"><a name="283"></a>283</td><td class="c3">1</td><td class="c0"><span title="Avg 18&micro;s">18&micro;s</span></td><td></td><td></td><td class="s">1;</td></tr>
474<tr><td class="h"><a name="284"></a>284</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
475<tr><td class="h"><a name="285"></a>285</td><td></td><td></td><td></td><td></td><td class="s">=head1 LICENSE</td></tr>
476<tr><td class="h"><a name="286"></a>286</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
477<tr><td class="h"><a name="287"></a>287</td><td></td><td></td><td></td><td></td><td class="s">This package is free software and is provided &quot;as is&quot; without express</td></tr>
478<tr><td class="h"><a name="288"></a>288</td><td></td><td></td><td></td><td></td><td class="s">or implied warranty. You can redistribute it and/or modify it under</td></tr>
479<tr><td class="h"><a name="289"></a>289</td><td></td><td></td><td></td><td></td><td class="s">the same terms as Perl itself.</td></tr>
480<tr><td class="h"><a name="290"></a>290</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
481<tr><td class="h"><a name="291"></a>291</td><td></td><td></td><td></td><td></td><td class="s">=head1 AUTHOR</td></tr>
482<tr><td class="h"><a name="292"></a>292</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
483<tr><td class="h"><a name="293"></a>293</td><td></td><td></td><td></td><td></td><td class="s">Tara L Andrews E&lt;lt&gt;aurum@cpan.orgE&lt;gt&gt;</td></tr>
484</tbody></table></div>
485
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