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nytprof run results of /variantgraph/<ID> and /relation/<ID>/relationships
[scpubgit/stemmatology.git] / stemmaweb / nytprof-runs / relation-uuid-relationships / lib-stemmaweb-Controller-Microservice-pm-2113-sub.html
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9 <title>Profile of lib/stemmaweb/Controller/Microservice.pm</title>
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50 <span class="siteTitle">NYTProf Performance Profile</span>
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56 <span class="siteTitle">&nbsp;</span>
57 <span class="siteSubtitle">Run on Thu May 31 16:49:15 2012<br />Reported on Thu May 31 16:50:51 2012</span>
58</div>
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111
112<div class="body_content"><br />
113<table class="file_summary"><tr><td class="h">Filename</td><td align="left"><a href="file:///Users/edenc/share/src/stemmatology/stemmaweb/lib/stemmaweb/Controller/Microservice.pm">/Users/edenc/share/src/stemmatology/stemmaweb/lib/stemmaweb/Controller/Microservice.pm</a></td></tr>
114<tr><td class="h">Statements</td><td align="left">Executed 41 statements in 2.42ms</td></tr></table>
115
116 <table id="subs_table" border="1" cellpadding="0" class="tablesorter">
117 <caption>Subroutines</caption>
118 <thead>
119 <tr>
120 <th>Calls</th>
121 <th><span title="Number of Places sub is called from">P</span></th>
122 <th><span title="Number of Files sub is called from">F</span></th>
123 <th>Exclusive<br />Time</th>
124 <th>Inclusive<br />Time</th>
125 <th>Subroutine</th>
126 </tr>
127 </thead>
128 <tbody>
129<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">42&micro;s</span></td><td class="c0"><span title="0.0%">4.19ms</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@2</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#2">BEGIN@2</a></span></td></tr>
130<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">14&micro;s</span></td><td class="c3"><span title="0.0%">74&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@74</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#74">BEGIN@74</a></span></td></tr>
131<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c0"><span title="0.0%">13&micro;s</span></td><td class="c3"><span title="0.0%">16&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@6</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#6">BEGIN@6</a></span></td></tr>
132<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c1"><span title="0.0%">12&micro;s</span></td><td class="c3"><span title="0.0%">36&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@72</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#72">BEGIN@72</a></span></td></tr>
133<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c1"><span title="0.0%">11&micro;s</span></td><td class="c3"><span title="0.0%">55&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@50</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#50">BEGIN@50</a></span></td></tr>
134<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c2"><span title="0.0%">11&micro;s</span></td><td class="c0"><span title="0.0%">783&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@56</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#56">BEGIN@56</a></span></td></tr>
135<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c2"><span title="0.0%">11&micro;s</span></td><td class="c3"><span title="0.0%">12&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@8</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#8">BEGIN@8</a></span></td></tr>
136<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">10&micro;s</span></td><td class="c3"><span title="0.0%">50&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@3</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#3">BEGIN@3</a></span></td></tr>
137<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">10&micro;s</span></td><td class="c3"><span title="0.0%">52&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@9</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#9">BEGIN@9</a></span></td></tr>
138<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">10&micro;s</span></td><td class="c0"><span title="0.0%">759&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@79</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#79">BEGIN@79</a></span></td></tr>
139<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">10&micro;s</span></td><td class="c3"><span title="0.0%">48&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@146</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#146">BEGIN@146</a></span></td></tr>
140<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">10&micro;s</span></td><td class="c0"><span title="0.0%">740&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@159</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#159">BEGIN@159</a></span></td></tr>
141<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">10&micro;s</span></td><td class="c0"><span title="0.0%">597&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@222</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#222">BEGIN@222</a></span></td></tr>
142<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">10&micro;s</span></td><td class="c3"><span title="0.0%">43&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@149</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#149">BEGIN@149</a></span></td></tr>
143<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">9&micro;s</span></td><td class="c1"><span title="0.0%">245&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@5</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#5">BEGIN@5</a></span></td></tr>
144<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">9&micro;s</span></td><td class="c0"><span title="0.0%">608&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@177</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#177">BEGIN@177</a></span></td></tr>
145<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">9&micro;s</span></td><td class="c3"><span title="0.0%">128&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@4</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#4">BEGIN@4</a></span></td></tr>
146<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">9&micro;s</span></td><td class="c3"><span title="0.0%">42&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@53</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#53">BEGIN@53</a></span></td></tr>
147<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">9&micro;s</span></td><td class="c0"><span title="0.0%">615&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@193</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#193">BEGIN@193</a></span></td></tr>
148<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">8&micro;s</span></td><td class="c3"><span title="0.0%">42&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@137</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#137">BEGIN@137</a></span></td></tr>
149<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">8&micro;s</span></td><td class="c0"><span title="0.0%">596&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@98</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#98">BEGIN@98</a></span></td></tr>
150<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">8&micro;s</span></td><td class="c0"><span title="0.0%">5.29ms</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@11</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#11">BEGIN@11</a></span></td></tr>
151<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">8&micro;s</span></td><td class="c0"><span title="0.0%">584&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@210</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#210">BEGIN@210</a></span></td></tr>
152<tr><td class="c3">1</td><td class="c3">1</td><td class="c3">1</td><td class="c3"><span title="0.0%">7&micro;s</span></td><td class="c3"><span title="0.0%">37&micro;s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::BEGIN@135</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#135">BEGIN@135</a></span></td></tr>
153<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::_parse_to_tradition</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#226">_parse_to_tradition</a></span></td></tr>
154<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::character_matrix</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#90">character_matrix</a></span></td></tr>
155<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::default</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#218">default</a></span></td></tr>
156<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::error</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#201">error</a></span></td></tr>
157<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::renderSVG</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#47">renderSVG</a></span></td></tr>
158<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::run_pars</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#120">run_pars</a></span></td></tr>
159<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::stemma_svg</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#68">stemma_svg</a></span></td></tr>
160<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::view_svg</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#185">view_svg</a></span></td></tr>
161<tr><td class="c3">0</td><td class="c3">0</td><td class="c3">0</td><td class="c3"><span title="0.0%">0s</span></td><td class="c3"><span title="0.0%">0s</span></td><td class="sub_name"><span style="display: none;">stemmaweb::Controller::Microservice::::view_table</span>stemmaweb::Controller::Microservice::<a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#170">view_table</a></span></td></tr>
162</tbody></table>
163 Call graph for these subroutines as a
164 <a href="http://en.wikipedia.org/wiki/Graphviz">Graphviz</a>
165 <a href="Users-edenc-share-src-stemmatology-stemmaweb-lib-stemmaweb-Controller-Microservice-pm.dot">dot language file</a>.
166
167 <table border="1" cellpadding="0">
168 <thead>
169 <tr><th>Line</th>
170 <th><span title="Number of statements executed">State<br />ments</span></th>
171 <th><span title="Time spend executing statements on the line,
172 excluding time spent executing statements in any called subroutines">Time<br />on line</span></th>
173 <th><span title="Number of subroutines calls">Calls</span></th>
174 <th><span title="Time spent in subroutines called (inclusive)">Time<br />in subs</span></th>
175 <th class="left_indent_header">Code</th>
176 </tr>
177
178 </thead>
179 <tbody>
180 <tr><td class="h"><a name="1"></a>1</td><td></td><td></td><td></td><td></td><td class="s">package stemmaweb::Controller::Microservice;</td></tr>
181<tr><td class="h"><a name="2"></a>2</td><td class="c3">2</td><td class="c3"><span title="Avg 20&micro;s">40&micro;s</span></td><td class="c3">2</td><td class="c0">8.34ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 4.19ms (42&micro;s+4.15) within stemmaweb::Controller::Microservice::BEGIN@2 which was called:
182# once (42&micro;s+4.15ms) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#2">line 2</a></div></div>use Moose;<div class="calls"><div class="calls_out"># spent 4.19ms making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#2">stemmaweb::Controller::Microservice::BEGIN@2</a>
183# spent 4.15ms making 1 call to <a href="Moose-Exporter-pm-82-sub.html#402">Moose::Exporter::__ANON__[Moose/Exporter.pm:492]</a></div></div></td></tr>
184<tr><td class="h"><a name="3"></a>3</td><td class="c3">2</td><td class="c3"><span title="Avg 18&micro;s">36&micro;s</span></td><td class="c3">2</td><td class="c3">90&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 50&micro;s (10+40) within stemmaweb::Controller::Microservice::BEGIN@3 which was called:
185# once (10&micro;s+40&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#3">line 3</a></div></div>use namespace::autoclean;<div class="calls"><div class="calls_out"># spent 50&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#3">stemmaweb::Controller::Microservice::BEGIN@3</a>
186# spent 40&micro;s making 1 call to <a href="namespace-autoclean-pm-375-sub.html#19">namespace::autoclean::import</a></div></div></td></tr>
187<tr><td class="h"><a name="4"></a>4</td><td class="c3">2</td><td class="c3"><span title="Avg 14&micro;s">28&micro;s</span></td><td class="c3">2</td><td class="c3">248&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 128&micro;s (9+119) within stemmaweb::Controller::Microservice::BEGIN@4 which was called:
188# once (9&micro;s+119&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#4">line 4</a></div></div>use JSON;<div class="calls"><div class="calls_out"># spent 128&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#4">stemmaweb::Controller::Microservice::BEGIN@4</a>
189# spent 119&micro;s making 1 call to <a href="JSON-pm-674-sub.html#77">JSON::import</a></div></div></td></tr>
190<tr><td class="h"><a name="5"></a>5</td><td class="c3">2</td><td class="c3"><span title="Avg 16&micro;s">32&micro;s</span></td><td class="c3">2</td><td class="c3">481&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 245&micro;s (9+236) within stemmaweb::Controller::Microservice::BEGIN@5 which was called:
191# once (9&micro;s+236&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#5">line 5</a></div></div>use TryCatch;<div class="calls"><div class="calls_out"># spent 245&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#5">stemmaweb::Controller::Microservice::BEGIN@5</a>
192# spent 236&micro;s making 1 call to <a href="Sub-Exporter-pm-112-sub.html#711">Sub::Exporter::__ANON__[Sub/Exporter.pm:756]</a></div></div></td></tr>
193<tr><td class="h"><a name="6"></a>6</td><td class="c3">2</td><td class="c3"><span title="Avg 14&micro;s">27&micro;s</span></td><td class="c3">2</td><td class="c3">18&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 16&micro;s (13+3) within stemmaweb::Controller::Microservice::BEGIN@6 which was called:
194# once (13&micro;s+3&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#6">line 6</a></div></div>use Text::Tradition;<div class="calls"><div class="calls_out"># spent 16&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#6">stemmaweb::Controller::Microservice::BEGIN@6</a>
195# spent 3&micro;s making 1 call to <a href="UNIVERSAL-pm-738-sub.html#16">UNIVERSAL::import</a></div></div></td></tr>
196<tr><td class="h"><a name="7"></a>7</td><td></td><td></td><td></td><td></td><td class="s">#use Text::Tradition::Error;</td></tr>
197<tr><td class="h"><a name="8"></a>8</td><td class="c3">2</td><td class="c3"><span title="Avg 16&micro;s">32&micro;s</span></td><td class="c3">2</td><td class="c3">13&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 12&micro;s (11+1) within stemmaweb::Controller::Microservice::BEGIN@8 which was called:
198# once (11&micro;s+1&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#8">line 8</a></div></div>use Text::Tradition::Stemma;<div class="calls"><div class="calls_out"># spent 12&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#8">stemmaweb::Controller::Microservice::BEGIN@8</a>
199# spent 1&micro;s making 1 call to <a href="UNIVERSAL-pm-738-sub.html#16">UNIVERSAL::import</a></div></div></td></tr>
200<tr><td class="h"><a name="9"></a>9</td><td class="c3">2</td><td class="c3"><span title="Avg 19&micro;s">38&micro;s</span></td><td class="c3">2</td><td class="c3">94&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 52&micro;s (10+42) within stemmaweb::Controller::Microservice::BEGIN@9 which was called:
201# once (10&micro;s+42&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#9">line 9</a></div></div>use Text::Tradition::StemmaUtil qw/ character_input phylip_pars newick_to_svg /;<div class="calls"><div class="calls_out"># spent 52&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#9">stemmaweb::Controller::Microservice::BEGIN@9</a>
202# spent 42&micro;s making 1 call to <a href="Exporter-pm-8-sub.html#28">Exporter::import</a></div></div></td></tr>
203<tr><td class="h"><a name="10"></a>10</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
204<tr><td class="h"><a name="11"></a>11</td><td class="c3">1</td><td class="c2"><span title="Avg 112&micro;s">112&micro;s</span></td><td class="c3">2</td><td class="c0">10.6ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 5.29ms (8&micro;s+5.29) within stemmaweb::Controller::Microservice::BEGIN@11 which was called:
205# once (8&micro;s+5.29ms) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#11">line 11</a></div></div>BEGIN { extends 'Catalyst::Controller' }<div class="calls"><div class="calls_out"># spent 5.29ms making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#11">stemmaweb::Controller::Microservice::BEGIN@11</a>
206# spent 5.29ms making 1 call to <a href="Moose-pm-62-sub.html#55">Moose::extends</a></div></div></td></tr>
207<tr><td class="h"><a name="12"></a>12</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
208<tr><td class="h"><a name="13"></a>13</td><td></td><td></td><td></td><td></td><td class="s">=head1 NAME</td></tr>
209<tr><td class="h"><a name="14"></a>14</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
210<tr><td class="h"><a name="15"></a>15</td><td></td><td></td><td></td><td></td><td class="s">stemmaweb::Controller::Microservice - Controller for stemmaweb standalone</td></tr>
211<tr><td class="h"><a name="16"></a>16</td><td></td><td></td><td></td><td></td><td class="s">components</td></tr>
212<tr><td class="h"><a name="17"></a>17</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
213<tr><td class="h"><a name="18"></a>18</td><td></td><td></td><td></td><td></td><td class="s">=head1 DESCRIPTION</td></tr>
214<tr><td class="h"><a name="19"></a>19</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
215<tr><td class="h"><a name="20"></a>20</td><td></td><td></td><td></td><td></td><td class="s">This package contains the pieces of web functionality relating to text tradition</td></tr>
216<tr><td class="h"><a name="21"></a>21</td><td></td><td></td><td></td><td></td><td class="s">objects that are useful outside the framework of this application.</td></tr>
217<tr><td class="h"><a name="22"></a>22</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
218<tr><td class="h"><a name="23"></a>23</td><td></td><td></td><td></td><td></td><td class="s">=head1 COLLATION PARSING INPUT</td></tr>
219<tr><td class="h"><a name="24"></a>24</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
220<tr><td class="h"><a name="25"></a>25</td><td></td><td></td><td></td><td></td><td class="s">Each URL call which operates on a provided collation is called by POST with the</td></tr>
221<tr><td class="h"><a name="26"></a>26</td><td></td><td></td><td></td><td></td><td class="s">following form parameters in the body: </td></tr>
222<tr><td class="h"><a name="27"></a>27</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
223<tr><td class="h"><a name="28"></a>28</td><td></td><td></td><td></td><td></td><td class="s">=over 4 </td></tr>
224<tr><td class="h"><a name="29"></a>29</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
225<tr><td class="h"><a name="30"></a>30</td><td></td><td></td><td></td><td></td><td class="s">=item * type - Can be one of CollateX, CSV, JSON, nCritic, TEI, Tabular.</td></tr>
226<tr><td class="h"><a name="31"></a>31</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
227<tr><td class="h"><a name="32"></a>32</td><td></td><td></td><td></td><td></td><td class="s">=item * data - The collation data itself.</td></tr>
228<tr><td class="h"><a name="33"></a>33</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
229<tr><td class="h"><a name="34"></a>34</td><td></td><td></td><td></td><td></td><td class="s">=back</td></tr>
230<tr><td class="h"><a name="35"></a>35</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
231<tr><td class="h"><a name="36"></a>36</td><td></td><td></td><td></td><td></td><td class="s">=head1 COLLATION URLs</td></tr>
232<tr><td class="h"><a name="37"></a>37</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
233<tr><td class="h"><a name="38"></a>38</td><td></td><td></td><td></td><td></td><td class="s">=head2 renderSVG</td></tr>
234<tr><td class="h"><a name="39"></a>39</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
235<tr><td class="h"><a name="40"></a>40</td><td></td><td></td><td></td><td></td><td class="s"> POST microservice/renderSVG</td></tr>
236<tr><td class="h"><a name="41"></a>41</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
237<tr><td class="h"><a name="42"></a>42</td><td></td><td></td><td></td><td></td><td class="s">Parse the passed collation data and return an SVG of the collated text.</td></tr>
238<tr><td class="h"><a name="43"></a>43</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
239<tr><td class="h"><a name="44"></a>44</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
240<tr><td class="h"><a name="45"></a>45</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
241<tr><td class="h"><a name="46"></a>46</td><td></td><td></td><td></td><td></td><td class="s"># Utility function to render SVG from a collation in some recognized format.</td></tr>
242<tr><td class="h"><a name="47"></a>47</td><td></td><td></td><td></td><td></td><td class="s">sub renderSVG :Local :Args(0) {</td></tr>
243<tr><td class="h"><a name="48"></a>48</td><td></td><td></td><td></td><td></td><td class="s"> my( $self, $c ) = @_;</td></tr>
244<tr><td class="h"><a name="49"></a>49</td><td></td><td></td><td></td><td></td><td class="s"> my $tradition = _parse_to_tradition( $c-&gt;request );</td></tr>
245<tr><td class="h"><a name="50"></a>50</td><td class="c3">1</td><td class="c3"><span title="Avg 108&micro;s">108&micro;s</span></td><td class="c0">4</td><td class="c3">454&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 55&micro;s (11+44) within stemmaweb::Controller::Microservice::BEGIN@50 which was called:
246# once (11&micro;s+44&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#50">line 50</a></div></div> try {<div class="calls"><div class="calls_out"> # spent 327&micro;s making 1 call to <a href="Devel-Declare-pm-906-sub.html#271">Devel::Declare::linestr_callback</a>
247 # spent 55&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#50">stemmaweb::Controller::Microservice::BEGIN@50</a>
248 # spent 44&micro;s making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a>
249 # spent 28&micro;s making 1 call to <a href="Devel-Declare-pm-906-sub.html#108">Devel::Declare::done_declare</a></div></div></td></tr>
250<tr><td class="h"><a name="51"></a>51</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{'result'} = $tradition-&gt;collation-&gt;as_svg;</td></tr>
251<tr><td class="h"><a name="52"></a>52</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;forward('View::SVG');</td></tr>
252<tr><td class="h"><a name="53"></a>53</td><td class="c3">1</td><td class="c3"><span title="Avg 109&micro;s">109&micro;s</span></td><td class="c1">3</td><td class="c0">12.6ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 42&micro;s (9+34) within stemmaweb::Controller::Microservice::BEGIN@53 which was called:
253# once (9&micro;s+34&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#53">line 53</a></div></div> } catch( Text::Tradition::Error $e ) {<div class="calls"><div class="calls_out"> # spent 12.5ms making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a>
254 # spent 42&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#53">stemmaweb::Controller::Microservice::BEGIN@53</a>
255 # spent 34&micro;s making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a></div></div></td></tr>
256<tr><td class="h"><a name="54"></a>54</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;detach( 'error', [ $e ] );</td></tr>
257<tr><td class="h"><a name="55"></a>55</td><td></td><td></td><td class="c3">1</td><td class="c3">76&micro;s</td><td class="s"> }<div class="calls"><div class="calls_out"> # spent 76&micro;s making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a></div></div></td></tr>
258<tr><td class="h"><a name="56"></a>56</td><td class="c3">2</td><td class="c2"><span title="Avg 62&micro;s">124&micro;s</span></td><td class="c3">2</td><td class="c3">1.56ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 783&micro;s (11+772) within stemmaweb::Controller::Microservice::BEGIN@56 which was called:
259# once (11&micro;s+772&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#56">line 56</a></div></div><div class="calls"><div class="calls_out"># spent 783&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#56">stemmaweb::Controller::Microservice::BEGIN@56</a>
260# spent 772&micro;s making 1 call to <a href="attributes-pm-622-sub.html#41">attributes::import</a></div></div></td></tr>
261<tr><td class="h"><a name="57"></a>57</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
262<tr><td class="h"><a name="58"></a>58</td><td></td><td></td><td></td><td></td><td class="s">=head1 STEMMA / DISTANCE TREE URLs</td></tr>
263<tr><td class="h"><a name="59"></a>59</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
264<tr><td class="h"><a name="60"></a>60</td><td></td><td></td><td></td><td></td><td class="s">=head2 stemma_svg</td></tr>
265<tr><td class="h"><a name="61"></a>61</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
266<tr><td class="h"><a name="62"></a>62</td><td></td><td></td><td></td><td></td><td class="s"> POST microservice/stemma_svg</td></tr>
267<tr><td class="h"><a name="63"></a>63</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
268<tr><td class="h"><a name="64"></a>64</td><td></td><td></td><td></td><td></td><td class="s">Parameter: dot =&gt; a string containing the dot description of the stemma.</td></tr>
269<tr><td class="h"><a name="65"></a>65</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
270<tr><td class="h"><a name="66"></a>66</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
271<tr><td class="h"><a name="67"></a>67</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
272<tr><td class="h"><a name="68"></a>68</td><td></td><td></td><td></td><td></td><td class="s">sub stemma_svg :Local :Args(0) {</td></tr>
273<tr><td class="h"><a name="69"></a>69</td><td></td><td></td><td></td><td></td><td class="s"> my( $self, $c ) = @_;</td></tr>
274<tr><td class="h"><a name="70"></a>70</td><td></td><td></td><td></td><td></td><td class="s"> my $t = Text::Tradition-&gt;new();</td></tr>
275<tr><td class="h"><a name="71"></a>71</td><td></td><td></td><td></td><td></td><td class="s"> my $stemma;</td></tr>
276<tr><td class="h"><a name="72"></a>72</td><td class="c3">1</td><td class="c3"><span title="Avg 68&micro;s">68&micro;s</span></td><td class="c0">4</td><td class="c3">245&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 36&micro;s (12+24) within stemmaweb::Controller::Microservice::BEGIN@72 which was called:
277# once (12&micro;s+24&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#72">line 72</a></div></div> try {<div class="calls"><div class="calls_out"> # spent 167&micro;s making 1 call to <a href="Devel-Declare-pm-906-sub.html#271">Devel::Declare::linestr_callback</a>
278 # spent 36&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#72">stemmaweb::Controller::Microservice::BEGIN@72</a>
279 # spent 24&micro;s making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a>
280 # spent 19&micro;s making 1 call to <a href="Devel-Declare-pm-906-sub.html#108">Devel::Declare::done_declare</a></div></div></td></tr>
281<tr><td class="h"><a name="73"></a>73</td><td></td><td></td><td></td><td></td><td class="s"> $stemma = $t-&gt;add_stemma( 'dot' =&gt; $c-&gt;req-&gt;param('dot') );</td></tr>
282<tr><td class="h"><a name="74"></a>74</td><td class="c3">1</td><td class="c0"><span title="Avg 180&micro;s">180&micro;s</span></td><td class="c1">3</td><td class="c0">12.6ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 74&micro;s (14+61) within stemmaweb::Controller::Microservice::BEGIN@74 which was called:
283# once (14&micro;s+61&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#74">line 74</a></div></div> } catch( Text::Tradition::Error $e ) {<div class="calls"><div class="calls_out"> # spent 12.4ms making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a>
284 # spent 74&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#74">stemmaweb::Controller::Microservice::BEGIN@74</a>
285 # spent 61&micro;s making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a></div></div></td></tr>
286<tr><td class="h"><a name="75"></a>75</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;detach( 'error', [ $e ] );</td></tr>
287<tr><td class="h"><a name="76"></a>76</td><td></td><td></td><td class="c3">1</td><td class="c3">118&micro;s</td><td class="s"> }<div class="calls"><div class="calls_out"> # spent 118&micro;s making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a></div></div></td></tr>
288<tr><td class="h"><a name="77"></a>77</td><td class="c3">1</td><td class="c3"><span title="Avg 74&micro;s">74&micro;s</span></td><td></td><td></td><td class="s"></td></tr>
289<tr><td class="h"><a name="78"></a>78</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;forward('View::SVG');</td></tr>
290<tr><td class="h"><a name="79"></a>79</td><td class="c3">2</td><td class="c1"><span title="Avg 63&micro;s">126&micro;s</span></td><td class="c3">2</td><td class="c3">1.51ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 759&micro;s (10+749) within stemmaweb::Controller::Microservice::BEGIN@79 which was called:
291# once (10&micro;s+749&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#79">line 79</a></div></div>}<div class="calls"><div class="calls_out"># spent 759&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#79">stemmaweb::Controller::Microservice::BEGIN@79</a>
292# spent 748&micro;s making 1 call to <a href="attributes-pm-622-sub.html#41">attributes::import</a></div></div></td></tr>
293<tr><td class="h"><a name="80"></a>80</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
294<tr><td class="h"><a name="81"></a>81</td><td></td><td></td><td></td><td></td><td class="s">=head2 character_matrix</td></tr>
295<tr><td class="h"><a name="82"></a>82</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
296<tr><td class="h"><a name="83"></a>83</td><td></td><td></td><td></td><td></td><td class="s"> POST microservice/character_matrix</td></tr>
297<tr><td class="h"><a name="84"></a>84</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
298<tr><td class="h"><a name="85"></a>85</td><td></td><td></td><td></td><td></td><td class="s">Given an alignment table in JSON form, in the parameter 'alignment', returns a</td></tr>
299<tr><td class="h"><a name="86"></a>86</td><td></td><td></td><td></td><td></td><td class="s">character matrix suitable for input to Phylip PARS. </td></tr>
300<tr><td class="h"><a name="87"></a>87</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
301<tr><td class="h"><a name="88"></a>88</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
302<tr><td class="h"><a name="89"></a>89</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
303<tr><td class="h"><a name="90"></a>90</td><td></td><td></td><td></td><td></td><td class="s">sub character_matrix :Local :Args(0) {</td></tr>
304<tr><td class="h"><a name="91"></a>91</td><td></td><td></td><td></td><td></td><td class="s"> my( $self, $c ) = @_;</td></tr>
305<tr><td class="h"><a name="92"></a>92</td><td></td><td></td><td></td><td></td><td class="s"> my $json = $c-&gt;request-&gt;params-&gt;{'alignment'};</td></tr>
306<tr><td class="h"><a name="93"></a>93</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;log-&gt;debug( $json );</td></tr>
307<tr><td class="h"><a name="94"></a>94</td><td></td><td></td><td></td><td></td><td class="s"> my $table = from_json( $json );</td></tr>
308<tr><td class="h"><a name="95"></a>95</td><td></td><td></td><td></td><td></td><td class="s"> my $matrix = character_input( $table );</td></tr>
309<tr><td class="h"><a name="96"></a>96</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{'result'} = { 'matrix' =&gt; $matrix };</td></tr>
310<tr><td class="h"><a name="97"></a>97</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;forward( 'View::JSON' );</td></tr>
311<tr><td class="h"><a name="98"></a>98</td><td class="c3">2</td><td class="c1"><span title="Avg 65&micro;s">130&micro;s</span></td><td class="c3">2</td><td class="c3">1.18ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 596&micro;s (8+587) within stemmaweb::Controller::Microservice::BEGIN@98 which was called:
312# once (8&micro;s+587&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#98">line 98</a></div></div>}<div class="calls"><div class="calls_out"># spent 596&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#98">stemmaweb::Controller::Microservice::BEGIN@98</a>
313# spent 587&micro;s making 1 call to <a href="attributes-pm-622-sub.html#41">attributes::import</a></div></div></td></tr>
314<tr><td class="h"><a name="99"></a>99</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
315<tr><td class="h"><a name="100"></a>100</td><td></td><td></td><td></td><td></td><td class="s">=head2 run_pars </td></tr>
316<tr><td class="h"><a name="101"></a>101</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
317<tr><td class="h"><a name="102"></a>102</td><td></td><td></td><td></td><td></td><td class="s"> POST microservice/run_pars</td></tr>
318<tr><td class="h"><a name="103"></a>103</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
319<tr><td class="h"><a name="104"></a>104</td><td></td><td></td><td></td><td></td><td class="s">Runs Phylip PARS on the provided alignment, and returns the result. Parameters include:</td></tr>
320<tr><td class="h"><a name="105"></a>105</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
321<tr><td class="h"><a name="106"></a>106</td><td></td><td></td><td></td><td></td><td class="s">=over 4</td></tr>
322<tr><td class="h"><a name="107"></a>107</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
323<tr><td class="h"><a name="108"></a>108</td><td></td><td></td><td></td><td></td><td class="s">=item * alignment - A JSON alignment table, as produced by CollateX</td></tr>
324<tr><td class="h"><a name="109"></a>109</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
325<tr><td class="h"><a name="110"></a>110</td><td></td><td></td><td></td><td></td><td class="s">=item * matrix - A character matrix suitable for Phylip.</td></tr>
326<tr><td class="h"><a name="111"></a>111</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
327<tr><td class="h"><a name="112"></a>112</td><td></td><td></td><td></td><td></td><td class="s">=item * format - The format in which to return the results. Default is 'newick'; also allowed is 'svg'.</td></tr>
328<tr><td class="h"><a name="113"></a>113</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
329<tr><td class="h"><a name="114"></a>114</td><td></td><td></td><td></td><td></td><td class="s">=back</td></tr>
330<tr><td class="h"><a name="115"></a>115</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
331<tr><td class="h"><a name="116"></a>116</td><td></td><td></td><td></td><td></td><td class="s">Exactly one of 'alignment' or 'matrix' must be specified.</td></tr>
332<tr><td class="h"><a name="117"></a>117</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
333<tr><td class="h"><a name="118"></a>118</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
334<tr><td class="h"><a name="119"></a>119</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
335<tr><td class="h"><a name="120"></a>120</td><td></td><td></td><td></td><td></td><td class="s">sub run_pars :Local :Args(0) {</td></tr>
336<tr><td class="h"><a name="121"></a>121</td><td></td><td></td><td></td><td></td><td class="s"> my( $self, $c ) = @_;</td></tr>
337<tr><td class="h"><a name="122"></a>122</td><td></td><td></td><td></td><td></td><td class="s"> my $matrix;</td></tr>
338<tr><td class="h"><a name="123"></a>123</td><td></td><td></td><td></td><td></td><td class="s"> if( $c-&gt;request-&gt;param('matrix') ) {</td></tr>
339<tr><td class="h"><a name="124"></a>124</td><td></td><td></td><td></td><td></td><td class="s"> $matrix = $c-&gt;request-&gt;param('matrix');</td></tr>
340<tr><td class="h"><a name="125"></a>125</td><td></td><td></td><td></td><td></td><td class="s"> } elsif( $c-&gt;request-&gt;param('alignment') ) {</td></tr>
341<tr><td class="h"><a name="126"></a>126</td><td></td><td></td><td></td><td></td><td class="s"> # Make the matrix from the alignment</td></tr>
342<tr><td class="h"><a name="127"></a>127</td><td></td><td></td><td></td><td></td><td class="s"> my $table = from_json( $c-&gt;request-&gt;param('alignment') );</td></tr>
343<tr><td class="h"><a name="128"></a>128</td><td></td><td></td><td></td><td></td><td class="s"> $matrix = character_input( $table );</td></tr>
344<tr><td class="h"><a name="129"></a>129</td><td></td><td></td><td></td><td></td><td class="s"> } else {</td></tr>
345<tr><td class="h"><a name="130"></a>130</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;detach( 'error', [ &quot;Must pass either an alignment or a matrix&quot; ] );</td></tr>
346<tr><td class="h"><a name="131"></a>131</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
347<tr><td class="h"><a name="132"></a>132</td><td></td><td></td><td></td><td></td><td class="s"> </td></tr>
348<tr><td class="h"><a name="133"></a>133</td><td></td><td></td><td></td><td></td><td class="s"> # Got the matrix, so try to run pars.</td></tr>
349<tr><td class="h"><a name="134"></a>134</td><td></td><td></td><td></td><td></td><td class="s"> my $output;</td></tr>
350<tr><td class="h"><a name="135"></a>135</td><td class="c3">1</td><td class="c3"><span title="Avg 59&micro;s">59&micro;s</span></td><td class="c0">4</td><td class="c3">257&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 37&micro;s (7+30) within stemmaweb::Controller::Microservice::BEGIN@135 which was called:
351# once (7&micro;s+30&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#135">line 135</a></div></div> try {<div class="calls"><div class="calls_out"> # spent 170&micro;s making 1 call to <a href="Devel-Declare-pm-906-sub.html#271">Devel::Declare::linestr_callback</a>
352 # spent 37&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#135">stemmaweb::Controller::Microservice::BEGIN@135</a>
353 # spent 30&micro;s making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a>
354 # spent 21&micro;s making 1 call to <a href="Devel-Declare-pm-906-sub.html#108">Devel::Declare::done_declare</a></div></div></td></tr>
355<tr><td class="h"><a name="136"></a>136</td><td></td><td></td><td></td><td></td><td class="s"> $output = phylip_pars( $matrix );</td></tr>
356<tr><td class="h"><a name="137"></a>137</td><td class="c3">1</td><td class="c3"><span title="Avg 106&micro;s">106&micro;s</span></td><td class="c1">3</td><td class="c0">12.9ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 42&micro;s (8+34) within stemmaweb::Controller::Microservice::BEGIN@137 which was called:
357# once (8&micro;s+34&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#137">line 137</a></div></div> } catch( Text::Tradition::Error $e ) {<div class="calls"><div class="calls_out"> # spent 12.8ms making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a>
358 # spent 42&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#137">stemmaweb::Controller::Microservice::BEGIN@137</a>
359 # spent 34&micro;s making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a></div></div></td></tr>
360<tr><td class="h"><a name="138"></a>138</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;detach( 'error', [ $e ] );</td></tr>
361<tr><td class="h"><a name="139"></a>139</td><td></td><td></td><td class="c3">1</td><td class="c3">79&micro;s</td><td class="s"> }<div class="calls"><div class="calls_out"> # spent 79&micro;s making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a></div></div></td></tr>
362<tr><td class="h"><a name="140"></a>140</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
363<tr><td class="h"><a name="141"></a>141</td><td class="c3">1</td><td class="c3"><span title="Avg 65&micro;s">65&micro;s</span></td><td></td><td></td><td class="s"></td></tr>
364<tr><td class="h"><a name="142"></a>142</td><td></td><td></td><td></td><td></td><td class="s"> my $format = 'newick';</td></tr>
365<tr><td class="h"><a name="143"></a>143</td><td></td><td></td><td></td><td></td><td class="s"> $format = $c-&gt;request-&gt;param('format') if $c-&gt;request-&gt;param('format');</td></tr>
366<tr><td class="h"><a name="144"></a>144</td><td></td><td></td><td></td><td></td><td class="s"> if( $format eq 'svg' ) {</td></tr>
367<tr><td class="h"><a name="145"></a>145</td><td></td><td></td><td></td><td></td><td class="s"> # Do something</td></tr>
368<tr><td class="h"><a name="146"></a>146</td><td class="c3">1</td><td class="c3"><span title="Avg 98&micro;s">98&micro;s</span></td><td class="c0">4</td><td class="c3">286&micro;s</td><td class="s"><div class="calls"><div class="calls_in"># spent 48&micro;s (10+38) within stemmaweb::Controller::Microservice::BEGIN@146 which was called:
369# once (10&micro;s+38&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#146">line 146</a></div></div> try {<div class="calls"><div class="calls_out"> # spent 170&micro;s making 1 call to <a href="Devel-Declare-pm-906-sub.html#271">Devel::Declare::linestr_callback</a>
370 # spent 48&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#146">stemmaweb::Controller::Microservice::BEGIN@146</a>
371 # spent 38&micro;s making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a>
372 # spent 30&micro;s making 1 call to <a href="Devel-Declare-pm-906-sub.html#108">Devel::Declare::done_declare</a></div></div></td></tr>
373<tr><td class="h"><a name="147"></a>147</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{'result'} = newick_to_svg( $output );</td></tr>
374<tr><td class="h"><a name="148"></a>148</td><td></td><td></td><td></td><td></td><td class="s"> $view = 'View::SVG';</td></tr>
375<tr><td class="h"><a name="149"></a>149</td><td class="c3">1</td><td class="c2"><span title="Avg 113&micro;s">113&micro;s</span></td><td class="c1">3</td><td class="c0">12.4ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 43&micro;s (10+33) within stemmaweb::Controller::Microservice::BEGIN@149 which was called:
376# once (10&micro;s+33&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#149">line 149</a></div></div> } catch( Text::Tradition::Error $e ) {<div class="calls"><div class="calls_out"> # spent 12.3ms making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a>
377 # spent 43&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#149">stemmaweb::Controller::Microservice::BEGIN@149</a>
378 # spent 33&micro;s making 1 call to <a href="TryCatch-pm-905-sub.html#103">TryCatch::inject_scope</a></div></div></td></tr>
379<tr><td class="h"><a name="150"></a>150</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;detach( 'error', [ $e ] );</td></tr>
380<tr><td class="h"><a name="151"></a>151</td><td></td><td></td><td class="c3">1</td><td class="c3">76&micro;s</td><td class="s"> }<div class="calls"><div class="calls_out"> # spent 76&micro;s making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a></div></div></td></tr>
381<tr><td class="h"><a name="152"></a>152</td><td class="c3">1</td><td class="c3"><span title="Avg 95&micro;s">95&micro;s</span></td><td></td><td></td><td class="s"></td></tr>
382<tr><td class="h"><a name="153"></a>153</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;detach( 'error', [ &quot;Requested output format $format unknown&quot; ] );</td></tr>
383<tr><td class="h"><a name="154"></a>154</td><td></td><td></td><td></td><td></td><td class="s"> } else {</td></tr>
384<tr><td class="h"><a name="155"></a>155</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{'result'} = { 'tree' =&gt; $output };</td></tr>
385<tr><td class="h"><a name="156"></a>156</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
386<tr><td class="h"><a name="157"></a>157</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
387<tr><td class="h"><a name="158"></a>158</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;forward( $view );</td></tr>
388<tr><td class="h"><a name="159"></a>159</td><td class="c3">2</td><td class="c1"><span title="Avg 65&micro;s">129&micro;s</span></td><td class="c3">2</td><td class="c3">1.47ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 740&micro;s (10+730) within stemmaweb::Controller::Microservice::BEGIN@159 which was called:
389# once (10&micro;s+730&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#159">line 159</a></div></div>}<div class="calls"><div class="calls_out"># spent 740&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#159">stemmaweb::Controller::Microservice::BEGIN@159</a>
390# spent 730&micro;s making 1 call to <a href="attributes-pm-622-sub.html#41">attributes::import</a></div></div></td></tr>
391<tr><td class="h"><a name="160"></a>160</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
392<tr><td class="h"><a name="161"></a>161</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
393<tr><td class="h"><a name="162"></a>162</td><td></td><td></td><td></td><td></td><td class="s">=head1 OPENSOCIAL URLs</td></tr>
394<tr><td class="h"><a name="163"></a>163</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
395<tr><td class="h"><a name="164"></a>164</td><td></td><td></td><td></td><td></td><td class="s">=head2 view_table</td></tr>
396<tr><td class="h"><a name="165"></a>165</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
397<tr><td class="h"><a name="166"></a>166</td><td></td><td></td><td></td><td></td><td class="s">Simple gadget to return the analysis table for the stexaminer</td></tr>
398<tr><td class="h"><a name="167"></a>167</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
399<tr><td class="h"><a name="168"></a>168</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
400<tr><td class="h"><a name="169"></a>169</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
401<tr><td class="h"><a name="170"></a>170</td><td></td><td></td><td></td><td></td><td class="s">sub view_table :Local :Args(0) {</td></tr>
402<tr><td class="h"><a name="171"></a>171</td><td></td><td></td><td></td><td></td><td class="s"> my( $self, $c ) = @_;</td></tr>
403<tr><td class="h"><a name="172"></a>172</td><td></td><td></td><td></td><td></td><td class="s"> my $m = $c-&gt;model('Directory');</td></tr>
404<tr><td class="h"><a name="173"></a>173</td><td></td><td></td><td></td><td></td><td class="s"> my $id = $c-&gt;request-&gt;params-&gt;{'textid'};</td></tr>
405<tr><td class="h"><a name="174"></a>174</td><td></td><td></td><td></td><td></td><td class="s"> my $t = run_analysis( $m-&gt;tradition( $id ), $m-&gt;stemma( $id ) );</td></tr>
406<tr><td class="h"><a name="175"></a>175</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{variants} = $t-&gt;{'variants'};</td></tr>
407<tr><td class="h"><a name="176"></a>176</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{template} = 'table_gadget.tt';</td></tr>
408<tr><td class="h"><a name="177"></a>177</td><td class="c3">2</td><td class="c2"><span title="Avg 57&micro;s">114&micro;s</span></td><td class="c3">2</td><td class="c3">1.21ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 608&micro;s (9+599) within stemmaweb::Controller::Microservice::BEGIN@177 which was called:
409# once (9&micro;s+599&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#177">line 177</a></div></div>}<div class="calls"><div class="calls_out"># spent 608&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#177">stemmaweb::Controller::Microservice::BEGIN@177</a>
410# spent 599&micro;s making 1 call to <a href="attributes-pm-622-sub.html#41">attributes::import</a></div></div></td></tr>
411<tr><td class="h"><a name="178"></a>178</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
412<tr><td class="h"><a name="179"></a>179</td><td></td><td></td><td></td><td></td><td class="s">=head2 view_stemma_svg</td></tr>
413<tr><td class="h"><a name="180"></a>180</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
414<tr><td class="h"><a name="181"></a>181</td><td></td><td></td><td></td><td></td><td class="s">Simple gadget to return the SVG for a given stemma</td></tr>
415<tr><td class="h"><a name="182"></a>182</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
416<tr><td class="h"><a name="183"></a>183</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
417<tr><td class="h"><a name="184"></a>184</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
418<tr><td class="h"><a name="185"></a>185</td><td></td><td></td><td></td><td></td><td class="s">sub view_svg :Local :Args(0) {</td></tr>
419<tr><td class="h"><a name="186"></a>186</td><td></td><td></td><td></td><td></td><td class="s"> my( $self, $c ) = @_;</td></tr>
420<tr><td class="h"><a name="187"></a>187</td><td></td><td></td><td></td><td></td><td class="s"> my $m = $c-&gt;model('Directory');</td></tr>
421<tr><td class="h"><a name="188"></a>188</td><td></td><td></td><td></td><td></td><td class="s"> my $stemma = $m-&gt;tradition( $c-&gt;request-&gt;params-&gt;{'textid'} )-&gt;stemma;</td></tr>
422<tr><td class="h"><a name="189"></a>189</td><td></td><td></td><td></td><td></td><td class="s"> if( $stemma ) {</td></tr>
423<tr><td class="h"><a name="190"></a>190</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{svg} = $stemma-&gt;as_svg;</td></tr>
424<tr><td class="h"><a name="191"></a>191</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
425<tr><td class="h"><a name="192"></a>192</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{template} = 'stemma_gadget.tt';</td></tr>
426<tr><td class="h"><a name="193"></a>193</td><td class="c3">2</td><td class="c3"><span title="Avg 52&micro;s">105&micro;s</span></td><td class="c3">2</td><td class="c3">1.22ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 615&micro;s (9+607) within stemmaweb::Controller::Microservice::BEGIN@193 which was called:
427# once (9&micro;s+607&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#193">line 193</a></div></div>}<div class="calls"><div class="calls_out"># spent 615&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#193">stemmaweb::Controller::Microservice::BEGIN@193</a>
428# spent 607&micro;s making 1 call to <a href="attributes-pm-622-sub.html#41">attributes::import</a></div></div></td></tr>
429<tr><td class="h"><a name="194"></a>194</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
430<tr><td class="h"><a name="195"></a>195</td><td></td><td></td><td></td><td></td><td class="s">=head2 error</td></tr>
431<tr><td class="h"><a name="196"></a>196</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
432<tr><td class="h"><a name="197"></a>197</td><td></td><td></td><td></td><td></td><td class="s">Default response when actions generate Text::Tradition::Error exceptions</td></tr>
433<tr><td class="h"><a name="198"></a>198</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
434<tr><td class="h"><a name="199"></a>199</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
435<tr><td class="h"><a name="200"></a>200</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
436<tr><td class="h"><a name="201"></a>201</td><td></td><td></td><td></td><td></td><td class="s">sub error :Private {</td></tr>
437<tr><td class="h"><a name="202"></a>202</td><td></td><td></td><td></td><td></td><td class="s"> my( $self, $c, $error ) = @_;</td></tr>
438<tr><td class="h"><a name="203"></a>203</td><td></td><td></td><td></td><td></td><td class="s"> my $errstr = $error;</td></tr>
439<tr><td class="h"><a name="204"></a>204</td><td></td><td></td><td></td><td></td><td class="s"> if( ref( $error ) eq 'Text::Tradition::Error' ) {</td></tr>
440<tr><td class="h"><a name="205"></a>205</td><td></td><td></td><td></td><td></td><td class="s"> $errstr = $error-&gt;ident . &quot;: &quot; . $error-&gt;message;</td></tr>
441<tr><td class="h"><a name="206"></a>206</td><td></td><td></td><td></td><td></td><td class="s"> }</td></tr>
442<tr><td class="h"><a name="207"></a>207</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;response-&gt;code( 500 );</td></tr>
443<tr><td class="h"><a name="208"></a>208</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{'error'} = $errstr;</td></tr>
444<tr><td class="h"><a name="209"></a>209</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;stash-&gt;{'template'} = 'error.tt';</td></tr>
445<tr><td class="h"><a name="210"></a>210</td><td class="c3">2</td><td class="c3"><span title="Avg 34&micro;s">69&micro;s</span></td><td class="c3">2</td><td class="c3">1.16ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 584&micro;s (8+576) within stemmaweb::Controller::Microservice::BEGIN@210 which was called:
446# once (8&micro;s+576&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#210">line 210</a></div></div>}<div class="calls"><div class="calls_out"># spent 584&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#210">stemmaweb::Controller::Microservice::BEGIN@210</a>
447# spent 576&micro;s making 1 call to <a href="attributes-pm-622-sub.html#41">attributes::import</a></div></div></td></tr>
448<tr><td class="h"><a name="211"></a>211</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
449<tr><td class="h"><a name="212"></a>212</td><td></td><td></td><td></td><td></td><td class="s">=head2 default</td></tr>
450<tr><td class="h"><a name="213"></a>213</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
451<tr><td class="h"><a name="214"></a>214</td><td></td><td></td><td></td><td></td><td class="s">Standard 404 error page</td></tr>
452<tr><td class="h"><a name="215"></a>215</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
453<tr><td class="h"><a name="216"></a>216</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
454<tr><td class="h"><a name="217"></a>217</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
455<tr><td class="h"><a name="218"></a>218</td><td></td><td></td><td></td><td></td><td class="s">sub default :Path {</td></tr>
456<tr><td class="h"><a name="219"></a>219</td><td></td><td></td><td></td><td></td><td class="s"> my ( $self, $c ) = @_;</td></tr>
457<tr><td class="h"><a name="220"></a>220</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;response-&gt;body( 'Page not found' );</td></tr>
458<tr><td class="h"><a name="221"></a>221</td><td></td><td></td><td></td><td></td><td class="s"> $c-&gt;response-&gt;status(404);</td></tr>
459<tr><td class="h"><a name="222"></a>222</td><td class="c3">2</td><td class="c0"><span title="Avg 88&micro;s">177&micro;s</span></td><td class="c3">2</td><td class="c3">1.18ms</td><td class="s"><div class="calls"><div class="calls_in"># spent 597&micro;s (10+587) within stemmaweb::Controller::Microservice::BEGIN@222 which was called:
460# once (10&micro;s+587&micro;s) by Catalyst::Utils::ensure_class_loaded at <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#222">line 222</a></div></div>}<div class="calls"><div class="calls_out"># spent 597&micro;s making 1 call to <a href="lib-stemmaweb-Controller-Microservice-pm-2113-sub.html#222">stemmaweb::Controller::Microservice::BEGIN@222</a>
461# spent 587&micro;s making 1 call to <a href="attributes-pm-622-sub.html#41">attributes::import</a></div></div></td></tr>
462<tr><td class="h"><a name="223"></a>223</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
463<tr><td class="h"><a name="224"></a>224</td><td></td><td></td><td></td><td></td><td class="s">## Internal utility function</td></tr>
464<tr><td class="h"><a name="225"></a>225</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
465<tr><td class="h"><a name="226"></a>226</td><td></td><td></td><td></td><td></td><td class="s">sub _parse_to_tradition {</td></tr>
466<tr><td class="h"><a name="227"></a>227</td><td></td><td></td><td></td><td></td><td class="s"> my $req = shift;</td></tr>
467<tr><td class="h"><a name="228"></a>228</td><td></td><td></td><td></td><td></td><td class="s"> my $type = $req-&gt;body_params-&gt;{'type'};</td></tr>
468<tr><td class="h"><a name="229"></a>229</td><td></td><td></td><td></td><td></td><td class="s"> my $name = $req-&gt;param('name') || 'Collation graph';</td></tr>
469<tr><td class="h"><a name="230"></a>230</td><td></td><td></td><td></td><td></td><td class="s"> my $data = $req-&gt;body_params-&gt;{'data'};</td></tr>
470<tr><td class="h"><a name="231"></a>231</td><td></td><td></td><td></td><td></td><td class="s"> my $opts = { </td></tr>
471<tr><td class="h"><a name="232"></a>232</td><td></td><td></td><td></td><td></td><td class="s"> 'name' =&gt; $name,</td></tr>
472<tr><td class="h"><a name="233"></a>233</td><td></td><td></td><td></td><td></td><td class="s"> 'input' =&gt; $type,</td></tr>
473<tr><td class="h"><a name="234"></a>234</td><td></td><td></td><td></td><td></td><td class="s"> 'string' =&gt; $data</td></tr>
474<tr><td class="h"><a name="235"></a>235</td><td></td><td></td><td></td><td></td><td class="s"> };</td></tr>
475<tr><td class="h"><a name="236"></a>236</td><td></td><td></td><td></td><td></td><td class="s"> $opts-&gt;{'sep_char'} = ',' if $type eq 'CSV';</td></tr>
476<tr><td class="h"><a name="237"></a>237</td><td></td><td></td><td></td><td></td><td class="s"> $opts-&gt;{'sep_char'} = &quot;\t&quot; if $type eq 'TabSep';</td></tr>
477<tr><td class="h"><a name="238"></a>238</td><td></td><td></td><td></td><td></td><td class="s"> return Text::Tradition-&gt;new( $opts );</td></tr>
478<tr><td class="h"><a name="239"></a>239</td><td></td><td></td><td></td><td></td><td class="s">}</td></tr>
479<tr><td class="h"><a name="240"></a>240</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
480<tr><td class="h"><a name="241"></a>241</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
481<tr><td class="h"><a name="242"></a>242</td><td></td><td></td><td></td><td></td><td class="s">=head1 AUTHOR</td></tr>
482<tr><td class="h"><a name="243"></a>243</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
483<tr><td class="h"><a name="244"></a>244</td><td></td><td></td><td></td><td></td><td class="s">Tara L Andrews</td></tr>
484<tr><td class="h"><a name="245"></a>245</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
485<tr><td class="h"><a name="246"></a>246</td><td></td><td></td><td></td><td></td><td class="s">=head1 LICENSE</td></tr>
486<tr><td class="h"><a name="247"></a>247</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
487<tr><td class="h"><a name="248"></a>248</td><td></td><td></td><td></td><td></td><td class="s">This library is free software. You can redistribute it and/or modify</td></tr>
488<tr><td class="h"><a name="249"></a>249</td><td></td><td></td><td></td><td></td><td class="s">it under the same terms as Perl itself.</td></tr>
489<tr><td class="h"><a name="250"></a>250</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
490<tr><td class="h"><a name="251"></a>251</td><td></td><td></td><td></td><td></td><td class="s">=cut</td></tr>
491<tr><td class="h"><a name="252"></a>252</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
492<tr><td class="h"><a name="253"></a>253</td><td class="c3">1</td><td class="c3"><span title="Avg 4&micro;s">4&micro;s</span></td><td class="c3">2</td><td class="c0">4.92ms</td><td class="s">__PACKAGE__-&gt;meta-&gt;make_immutable;<div class="calls"><div class="calls_out"># spent 4.91ms making 1 call to <a href="Class-MOP-Class-pm-103-sub.html#1280">Class::MOP::Class::make_immutable</a>
493# spent 17&micro;s making 1 call to <a href="Class-MOP-Package-pm-122-sub.html#221">stemmaweb::Controller::Microservice::meta</a></div></div></td></tr>
494<tr><td class="h"><a name="254"></a>254</td><td></td><td></td><td></td><td></td><td class="s"></td></tr>
495<tr><td class="h"><a name="255"></a>255</td><td class="c3">1</td><td class="c3"><span title="Avg 27&micro;s">27&micro;s</span></td><td class="c3">1</td><td class="c0">5.30ms</td><td class="s">1;<div class="calls"><div class="calls_out"># spent 5.30ms making 1 call to <a href="B-Hooks-EndOfScope-pm-376-sub.html#26">B::Hooks::EndOfScope::__ANON__[B/Hooks/EndOfScope.pm:26]</a></div></div></td></tr>
496</tbody></table></div>
497
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