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1 | package Text::Tradition::HasStemma; |
2 | |
3 | use strict; |
4 | use warnings; |
5 | use Moose::Role; |
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6 | use Date::Parse; |
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7 | use Text::Tradition::Stemma; |
8 | |
9 | =head1 NAME |
10 | |
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11 | Text::Tradition::HasStemma - add-on to associate stemma hypotheses to |
12 | Text::Tradition objects |
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13 | |
14 | =head1 DESCRIPTION |
15 | |
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16 | It is often the case that, for a given text tradition, the order of copying |
17 | of the witnesses can or should be reconstructed (or at least the attempt |
18 | should be made.) This class is a role that can be applied to |
19 | Text::Tradition objects to record stemma hypotheses. See the documentation |
20 | for L<Text::Tradition::Stemma> for more information. |
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21 | |
22 | =head1 METHODS |
23 | |
24 | =head2 stemmata |
25 | |
26 | Return a list of all stemmata associated with the tradition. |
27 | |
28 | =head2 stemma_count |
29 | |
30 | Return the number of stemma hypotheses defined for this tradition. |
31 | |
32 | =head2 stemma( $idx ) |
33 | |
34 | Return the L<Text::Tradition::Stemma> object identified by the given index. |
35 | |
36 | =head2 clear_stemmata |
37 | |
38 | Delete all stemma hypotheses associated with this tradition. |
39 | |
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40 | =head2 has_stemweb_jobid |
41 | |
42 | Returns true if there is currently a Stemweb job ID, indicating that a |
43 | stemma tree calculation from the Stemweb service is in process. |
44 | |
45 | =head2 stemweb_jobid |
46 | |
47 | Return the currently-running job ID (if any) for calculation of Stemweb |
48 | trees. |
49 | |
50 | =head2 set_stemweb_jobid( $jobid ) |
51 | |
52 | Record a job ID for a Stemweb calculation. |
53 | |
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54 | =cut |
55 | |
56 | has 'stemmata' => ( |
57 | traits => ['Array'], |
58 | isa => 'ArrayRef[Text::Tradition::Stemma]', |
59 | handles => { |
60 | stemmata => 'elements', |
61 | _add_stemma => 'push', |
62 | stemma => 'get', |
63 | stemma_count => 'count', |
64 | clear_stemmata => 'clear', |
65 | }, |
66 | default => sub { [] }, |
67 | ); |
68 | |
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69 | has 'stemweb_jobid' => ( |
70 | is => 'ro', |
71 | isa => 'Str', |
72 | writer => 'set_stemweb_jobid', |
73 | predicate => 'has_stemweb_jobid', |
74 | clearer => '_clear_stemweb_jobid', |
75 | ); |
76 | |
77 | before 'set_stemweb_jobid' => sub { |
78 | my( $self ) = shift; |
79 | if( $self->has_stemweb_jobid ) { |
80 | $self->throw( "Tradition already has a Stemweb jobid: " |
81 | . $self->stemweb_jobid ); |
82 | } |
83 | }; |
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84 | |
85 | =head2 add_stemma( $dotfile ) |
86 | |
87 | Initializes a Text::Tradition::Stemma object from the given dotfile, |
88 | and associates it with the tradition. |
89 | |
90 | =begin testing |
91 | |
92 | use Text::Tradition; |
93 | |
94 | my $t = Text::Tradition->new( |
95 | 'name' => 'simple test', |
96 | 'input' => 'Tabular', |
97 | 'file' => 't/data/simple.txt', |
98 | ); |
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99 | is( $t->stemma_count, 0, "No stemmas added yet" ); |
100 | my $s; |
101 | ok( $s = $t->add_stemma( dotfile => 't/data/simple.dot' ), "Added a simple stemma" ); |
102 | is( ref( $s ), 'Text::Tradition::Stemma', "Got a stemma object returned" ); |
103 | is( $t->stemma_count, 1, "Tradition claims to have a stemma" ); |
104 | is( $t->stemma(0), $s, "Tradition hands back the right stemma" ); |
105 | |
106 | =end testing |
107 | |
108 | =cut |
109 | |
110 | sub add_stemma { |
111 | my $self = shift; |
112 | my %opts = @_; |
113 | my $stemma_fh; |
114 | if( $opts{'dotfile'} ) { |
115 | open $stemma_fh, '<', $opts{'dotfile'} |
116 | or warn "Could not open file " . $opts{'dotfile'}; |
117 | } elsif( $opts{'dot'} ) { |
118 | my $str = $opts{'dot'}; |
119 | open $stemma_fh, '<', \$str; |
120 | } |
121 | # Assume utf-8 |
122 | binmode $stemma_fh, ':utf8'; |
123 | my $stemma = Text::Tradition::Stemma->new( |
124 | 'dot' => $stemma_fh ); |
125 | $self->_add_stemma( $stemma ) if $stemma; |
126 | return $stemma; |
127 | } |
128 | |
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129 | =head2 record_stemweb_result( $format, $data ) |
130 | |
131 | Records the result returned by a Stemweb calculation, and clears any |
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132 | existing job ID. Returns any new stemmata that were created. |
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133 | |
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134 | =begin testing |
135 | |
136 | use Text::Tradition; |
137 | use JSON qw/ from_json /; |
138 | |
139 | my $t = Text::Tradition->new( |
140 | 'name' => 'Stemweb test', |
141 | 'input' => 'Self', |
142 | 'file' => 't/data/besoin.xml', |
143 | 'stemweb_jobid' => '4', |
144 | ); |
145 | |
146 | is( $t->stemma_count, 0, "No stemmas added yet" ); |
147 | |
148 | my $answer = from_json( '{"status": 0, "job_id": "4", "algorithm": "RHM", "format": "newick", "start_time": "2013-10-26 10:44:14.050263", "result": "((((((((((((F,U),V),S),T1),T2),A),J),B),L),D),M),C);\n", "end_time": "2013-10-26 10:45:55.398944"}' ); |
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149 | my $newst = $t->record_stemweb_result( $answer ); |
150 | is( scalar @$newst, 1, "New stemma was returned from record_stemweb_result" ); |
151 | is( $newst->[0], $t->stemma(0), "Answer has the right object" ); |
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152 | ok( !$t->has_stemweb_jobid, "Job ID was removed from tradition" ); |
153 | is( $t->stemma_count, 1, "Tradition has new stemma" ); |
154 | ok( $t->stemma(0)->is_undirected, "New stemma is undirected as it should be" ); |
155 | is( $t->stemma(0)->identifier, "RHM 1382777054_0", "Stemma has correct identifier" ); |
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156 | is( $t->stemma(0)->from_jobid, 4, "New stemma has correct associated job ID" ); |
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157 | |
158 | |
159 | =end testing |
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160 | |
161 | =cut |
162 | |
163 | sub record_stemweb_result { |
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164 | my( $self, $answer ) = @_; |
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165 | my $jobid = $self->stemweb_jobid; |
166 | my $stemmata = []; |
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167 | if( $answer->{format} eq 'dot' ) { |
168 | $self->add_stemma( dot => $answer->{result} ); |
169 | } elsif( $answer->{format} eq 'newick' ) { |
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170 | $stemmata = Text::Tradition::Stemma->new_from_newick( $answer->{result} ); |
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171 | my $title = sprintf( "%s %d", $answer->{algorithm}, |
172 | str2time( $answer->{start_time} ) ); |
173 | my $i = 0; |
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174 | foreach my $stemma ( @$stemmata ) { |
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175 | my $ititle = $title . "_$i"; $i++; |
176 | $stemma->set_identifier( $ititle ); |
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177 | $stemma->_set_from_jobid( $jobid ); |
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178 | $self->_add_stemma( $stemma ); |
179 | } |
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180 | } else { |
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181 | $self->throw( "Cannot parse tree results with format " . $answer->{format} ); |
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182 | } |
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183 | $self->_clear_stemweb_jobid(); |
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184 | return $stemmata; |
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185 | } |
186 | |
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187 | 1; |
188 | |
189 | =head1 LICENSE |
190 | |
191 | This package is free software and is provided "as is" without express |
192 | or implied warranty. You can redistribute it and/or modify it under |
193 | the same terms as Perl itself. |
194 | |
195 | =head1 AUTHOR |
196 | |
197 | Tara L Andrews E<lt>aurum@cpan.orgE<gt> |